JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB38_chr3_141363504_141454792	0/0	t0020	4428	1	0	0	1	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0021	4427	1	0	1	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0022	4427	1	1	0	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0023	4427	1	0	0	0	0	1	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0024	4428	1	0	0	1	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0025	4427	1	0	0	1	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0026	4427	1	0	1	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0027	4427	1	0	0	0	0	1	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0028	4427	1	0	0	1	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0029	4427	1	0	0	0	1	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0030	4427	1	0	1	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0031	4427	1	0	1	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB39_chr12_56993836_57011546	1/0	t0001	4130	152	37	37	59	4	14	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0002	4126	62	14	13	26	5	4	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0003	4130	28	1	7	17	0	3	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0004	4130	17	15	1	1	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0005	4130	10	0	0	10	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0006	4130	9	8	1	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0007	4130	8	0	6	0	0	2	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0008	4130	5	0	0	5	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0009	4130	3	0	2	0	1	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0010	4130	2	2	0	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0011	4130	2	2	0	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0012	4130	2	0	2	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0013	4130	1	1	0	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0014	4130	1	0	0	1	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0015	4130	1	1	0	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0016	4116	1	1	0	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0017	4130	1	1	0	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0018	4130	1	0	1	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0019	4130	1	1	0	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/1	t0020	4130	1	0	0	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0021	4130	1	0	0	1	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0022	4130	1	0	0	0	0	1	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0023	4130	1	1	0	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0024	4126	1	1	0	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0025	4126	1	0	0	1	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0026	4130	1	0	1	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0027	4130	1	0	1	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	t0028	4126	1	0	0	1	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB3_chr11_62745963_62759160	1/1	t0001	1376	211	45	36	97	14	17	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	t0002	1376	51	6	17	22	1	5	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	t0003	1376	28	0	1	26	0	1	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	t0004	1377	25	3	8	9	0	5	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	t0005	1379	22	20	2	0	0	0	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	t0006	1376	17	17	0	0	0	0	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	t0007	1376	6	0	1	5	0	0	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	t0008	1376	3	0	1	0	0	2	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	t0009	1377	3	3	0	0	0	0	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	t0010	1377	2	0	0	2	0	0	copy fasta	ZBTB3	chr11	62745963	62759160