JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB3_chr11_62745963_62759160	0/0	t0011	1376	1	1	0	0	0	0	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	t0012	1376	1	1	0	0	0	0	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	t0013	1376	1	0	0	0	1	0	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	t0014	1377	1	0	0	1	0	0	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	t0015	1377	1	0	1	0	0	0	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	t0016	1376	1	1	0	0	0	0	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	t0017	1379	1	1	0	0	0	0	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	t0018	1377	1	0	1	0	0	0	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB40_chr1_22446851_22536154	0/0	t0001	4983	55	0	5	36	3	11	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	1/0	t0002	4982	43	10	11	13	2	6	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0003	4977	33	15	10	0	2	6	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0004	4977	32	0	2	30	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0005	4977	17	0	11	4	0	2	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0006	4983	17	3	4	8	0	2	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0007	4981	16	2	6	6	0	2	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0008	4983	12	0	2	10	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0009	4981	11	0	0	11	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0010	4977	10	0	1	9	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0011	4977	9	0	1	6	0	2	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0012	4982	9	7	2	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0013	4984	7	6	1	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0014	4983	5	5	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0015	4982	4	0	0	4	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0016	4983	4	4	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0017	4977	3	2	1	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0018	4981	3	3	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/1	t0019	4983	3	1	0	1	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0020	4983	3	3	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0021	4983	3	3	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0022	4977	3	2	0	0	1	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0023	4963	2	2	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0024	4977	2	2	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0025	4982	2	2	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0026	4982	2	0	0	2	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0027	4963	2	0	2	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0028	4982	2	2	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0029	4982	2	0	1	0	0	1	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0030	4983	2	0	2	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0031	4981	1	0	0	1	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0032	4977	1	0	0	0	0	1	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0033	4978	1	0	0	1	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0034	4978	1	0	0	1	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0035	4963	1	1	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0036	4963	1	1	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0037	4977	1	0	0	0	0	1	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0038	4981	1	0	1	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0039	4977	1	1	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0040	4977	1	0	1	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0041	4983	1	0	0	1	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0042	4983	1	0	0	1	0	0	copy fasta	ZBTB40	chr1	22446851	22536154