JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB40_chr1_22446851_22536154	0/0	t0043	4963	1	0	1	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0044	4963	1	1	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0045	4982	1	0	0	1	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0046	4982	1	0	0	1	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0047	4983	1	1	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0048	4982	1	0	1	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0049	4982	1	0	1	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0050	4982	1	0	0	1	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0051	4983	1	1	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0052	4977	1	1	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0053	4977	1	1	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	t0054	4977	1	0	1	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB41_chr1_197148682_197206293	0/0	t0001	5865	81	3	18	50	2	8	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0002	5866	66	4	15	32	3	12	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0003	5865	64	19	7	30	2	6	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	1/1	t0004	5866	27	15	5	0	2	3	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0005	5865	9	9	0	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0006	5865	8	1	6	0	1	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0007	5865	7	0	0	7	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0008	5865	7	0	0	7	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0009	5864	6	0	0	6	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0010	5866	6	5	0	0	0	1	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0011	5865	4	4	0	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0012	5860	4	4	0	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0013	5865	4	0	1	3	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0014	5864	3	0	1	2	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0015	5866	3	3	0	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0016	5865	3	3	0	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0017	5865	2	0	0	0	0	2	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0018	5863	2	2	0	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0019	5865	2	2	0	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0020	5865	2	2	0	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0021	5865	2	2	0	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0022	5866	2	2	0	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0023	5865	1	0	0	0	0	1	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0024	5865	1	0	0	1	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0025	5863	1	1	0	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0026	5865	1	1	0	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0027	5865	1	0	0	1	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0028	5864	1	0	1	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0029	5866	1	0	1	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0030	5866	1	0	1	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0031	5865	1	1	0	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0032	5865	1	1	0	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0033	5866	1	1	0	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0034	5865	1	0	0	0	0	1	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0035	5865	1	1	0	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	t0036	5865	1	0	0	1	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB42_chr14_104796101_104809712	1/0	t0001	2344	57	7	7	36	0	6	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	t0002	2346	9	1	3	5	0	0	copy fasta	ZBTB42	chr14	104796101	104809712