JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB42_chr14_104796101_104809712	0/0	t0003	2345	7	0	0	6	0	1	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	t0004	2348	6	0	0	6	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	t0005	2350	3	0	0	3	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	t0006	2344	3	0	0	3	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	t0007	2354	2	2	0	0	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	t0008	2346	2	1	1	0	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	t0009	2355	1	0	0	0	0	1	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	t0010	2344	1	1	0	0	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	t0011	2346	1	1	0	0	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	t0012	2346	1	0	1	0	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	t0013	2346	1	1	0	0	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	t0014	2347	1	1	0	0	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	t0015	2345	1	0	0	1	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	t0016	2344	1	1	0	0	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	t0017	2348	1	0	0	1	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	t0018	2344	1	0	0	1	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB43_chr9_126800040_126843210	1/1	t0001	4537	235	35	62	88	17	31	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0002	4536	59	0	0	55	0	4	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0003	4537	26	22	3	1	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0004	4536	10	2	2	2	1	3	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0005	4538	6	6	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0006	4538	4	0	2	1	0	1	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0007	4538	4	4	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0008	4536	4	0	0	4	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0009	4538	3	3	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0010	4536	3	2	1	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0011	4530	3	2	1	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0012	4537	2	0	1	1	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0013	4538	2	1	0	1	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0014	4539	2	2	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0015	4534	2	2	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0016	4535	2	0	0	2	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0017	4536	1	0	0	0	0	1	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0018	4536	1	0	0	0	0	1	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0019	4538	1	1	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0020	4537	1	0	0	0	0	1	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0021	4537	1	0	0	0	0	1	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0022	4538	1	0	0	1	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0023	4538	1	0	0	1	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0024	4537	1	0	0	0	0	1	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0025	4536	1	0	0	1	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0026	4537	1	1	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0027	4539	1	1	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0028	4538	1	1	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0029	4538	1	1	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0030	4534	1	1	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0031	4534	1	1	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0032	4537	1	1	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0033	4538	1	1	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0034	4539	1	1	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210