JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1QTNF2_chr5_160342754_160375626	1/0	t0009	1539	5	0	1	1	1	1	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0010	1536	2	0	0	2	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0011	1538	2	0	0	2	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0012	1536	2	0	0	2	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0013	1537	2	0	2	0	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0014	1538	2	2	0	0	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0015	1538	2	2	0	0	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0016	1536	1	0	0	1	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0017	1537	1	0	0	1	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0018	1539	1	0	1	0	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0019	1538	1	0	0	1	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0020	1539	1	1	0	0	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0021	1536	1	1	0	0	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0022	1539	1	0	0	0	0	1	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0023	1536	1	0	0	1	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0024	1538	1	0	0	0	0	1	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0025	1538	1	0	0	1	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0026	1538	1	0	0	1	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0027	1537	1	1	0	0	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0028	1537	1	1	0	0	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0029	1538	1	0	0	1	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0030	1538	1	1	0	0	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0031	1539	1	0	0	1	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0032	1538	1	0	1	0	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0033	1538	1	1	0	0	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0034	1539	1	1	0	0	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0035	1538	1	0	0	1	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF3_chr5_34012858_34048213	0/0	t0001	2814	138	23	27	63	4	21	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	1/0	t0002	2814	136	30	21	76	3	5	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/1	t0003	2813	51	8	5	25	2	10	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0004	2813	27	0	5	22	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0005	2792	12	12	0	0	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0006	2814	12	10	2	0	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0007	2814	6	0	2	0	2	2	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0008	2813	5	4	0	0	0	1	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0009	2813	4	4	0	0	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0010	2814	3	0	2	0	1	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0011	2814	2	0	0	2	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0012	2792	2	2	0	0	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0013	2814	2	2	0	0	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0014	2814	1	0	0	1	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0015	2814	1	0	0	1	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0016	2813	1	0	0	0	0	1	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0017	2814	1	0	1	0	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0018	2814	1	0	0	1	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0019	2814	1	0	0	0	0	1	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0020	2814	1	1	0	0	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0021	2815	1	0	0	1	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0022	2814	1	0	1	0	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0023	2814	1	0	0	1	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213