JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB46_chr20_63738670_63836264	0/0	t0041	3461	1	0	1	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0042	3462	1	0	0	1	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0043	3462	1	0	0	1	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0044	3461	1	1	0	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB47_chr3_42648697_42672580	0/0	t0001	3252	155	23	45	66	5	16	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/1	t0002	3251	76	2	14	41	9	9	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0003	3251	38	9	3	23	1	2	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0004	3253	23	22	1	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0005	3252	14	0	3	11	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	1/0	t0006	3251	11	0	0	10	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0007	3251	9	7	2	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0008	3252	7	6	0	0	0	1	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0009	3252	7	7	0	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0010	3252	6	0	0	3	0	3	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0011	3251	4	3	0	1	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0012	3252	4	1	1	2	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0013	3252	3	0	0	0	0	3	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0014	3251	2	1	1	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0015	3251	2	2	0	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0016	3252	2	2	0	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0017	3251	2	1	1	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0018	3251	2	0	0	2	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0019	3251	2	0	0	2	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0020	3252	2	1	1	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0021	3252	2	2	0	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0022	3252	1	1	0	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0023	3251	1	0	0	1	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0024	3251	1	0	0	1	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0025	3251	1	0	0	0	0	1	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0026	3251	1	0	0	1	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0027	3252	1	0	0	0	0	1	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0028	3218	1	1	0	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0029	3252	1	0	1	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0030	3252	1	0	1	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0031	3253	1	0	0	1	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0032	3253	1	0	1	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0033	3251	1	0	0	1	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0034	3251	1	0	1	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0035	3251	1	0	0	0	0	1	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0036	3251	1	0	0	1	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0037	3251	1	0	0	1	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0038	3252	1	0	0	1	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0039	3252	1	0	0	1	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0040	3252	1	0	0	0	1	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0041	3252	1	0	0	0	0	1	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0042	3252	1	1	0	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0043	3252	1	0	0	1	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	t0044	3252	1	0	0	1	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB48_chr1_6574994_6594280	1/1	t0001	281	304	75	69	100	14	44	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	t0002	281	82	1	9	68	0	4	copy fasta	ZBTB48	chr1	6574994	6594280