JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB48_chr1_6574994_6594280	0/0	t0003	281	12	5	2	5	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	t0004	281	6	6	0	0	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	t0005	281	3	3	0	0	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	t0006	281	3	3	0	0	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	t0007	281	1	0	1	0	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	t0008	281	1	0	1	0	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	t0009	281	1	1	0	0	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	t0010	281	1	0	0	1	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB49_chr4_4285251_4326783	1/1	t0001	589	398	81	69	194	14	38	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	t0002	589	7	6	1	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	t0003	589	1	1	0	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	t0004	589	1	1	0	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	t0005	589	1	0	0	1	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	t0006	589	1	0	0	1	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	t0007	589	1	1	0	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB4_chr17_7454378_7484631	0/1	t0001	2818	223	39	53	101	7	22	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0002	2818	53	20	5	12	2	14	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0003	2819	44	11	9	15	4	5	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0004	2819	19	0	2	17	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	1/0	t0005	2819	11	10	0	0	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0006	2806	11	0	0	11	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0007	2819	7	0	4	3	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0008	2818	6	0	0	5	0	1	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0009	2819	4	3	0	1	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0010	2818	4	4	0	0	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0011	2818	3	2	1	0	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0012	2818	2	0	0	0	0	2	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0013	2819	2	0	0	2	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0014	2819	2	1	1	0	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0015	2837	1	0	0	1	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0016	2819	1	0	0	1	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0017	2818	1	1	0	0	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0018	2818	1	1	0	0	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0019	2818	1	1	0	0	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0020	2818	1	0	1	0	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0021	2819	1	1	0	0	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0022	2819	1	0	0	0	1	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	t0023	2818	1	0	0	1	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB5_chr9_37433102_37470450	0/0	t0001	2661	148	25	36	65	7	15	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	1/0	t0002	2657	94	39	22	18	1	13	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0003	2661	79	1	6	59	1	12	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0004	2657	10	1	0	7	1	1	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0005	2657	6	5	1	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/1	t0006	2658	6	0	1	2	2	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0007	2657	5	5	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0008	2657	5	0	0	5	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0009	2661	3	3	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0010	2661	3	0	0	3	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0011	2657	2	2	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0012	2658	2	2	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450