JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB5_chr9_37433102_37470450	0/0	t0013	2657	1	1	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0014	2661	1	1	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0015	2657	1	1	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0016	2657	1	0	0	1	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0017	2657	1	1	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0018	2657	1	1	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0019	2657	1	0	1	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0020	2661	1	1	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0021	2649	1	0	0	1	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0022	2661	1	0	0	0	0	1	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0023	2661	1	0	0	1	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0024	2661	1	0	0	1	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0025	2661	1	0	1	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0026	2657	1	1	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0027	2657	1	1	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0028	2657	1	1	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	t0029	2657	1	0	0	1	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB6_chr9_122903056_122918323	0/1	t0001	2825	161	38	39	47	11	25	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	t0002	2825	157	20	22	111	1	3	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	t0003	2825	23	0	1	18	2	2	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	t0004	2825	15	10	4	0	1	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	1/0	t0005	2825	13	11	1	0	0	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	t0006	2825	5	4	1	0	0	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	t0007	2825	5	0	1	0	0	4	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	t0008	2825	3	3	0	0	0	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	t0009	2825	2	0	0	0	2	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	t0010	2825	2	2	0	0	0	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	t0011	2825	2	0	2	0	0	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	t0012	2825	2	0	0	2	0	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	t0013	2825	2	0	1	0	1	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	t0014	2825	2	2	0	0	0	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	t0015	2825	2	1	1	0	0	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	t0016	2825	2	0	0	2	0	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	t0017	2825	1	0	1	0	0	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	t0018	2825	1	1	0	0	0	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	t0019	2825	1	0	0	1	0	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	t0020	2825	1	0	0	1	0	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	t0021	2825	1	0	0	1	0	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	t0022	2825	1	0	0	1	0	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB7A_chr19_4038303_4071899	0/0	t0001	4679	22	2	9	6	2	3	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/1	t0002	4681	11	1	2	5	1	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0003	4680	8	0	1	4	0	3	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0004	4680	7	1	1	4	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0005	4681	7	0	2	3	0	2	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0006	4665	7	7	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0007	4682	5	0	0	1	0	4	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0008	4681	5	0	1	2	0	2	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0009	4681	4	0	2	1	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0010	4676	4	1	1	0	1	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0011	4683	3	0	0	3	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899