JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
ZBTB7A_chr19_4038303_4071899	0/0	t0012	4679	3	0	0	2	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0013	4680	3	1	2	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0014	4666	3	3	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0015	4677	3	3	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0016	4678	3	0	3	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0017	4683	2	2	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0018	4686	2	0	0	2	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0019	4683	2	0	0	0	2	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0020	4682	2	0	1	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0021	4681	2	0	0	1	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0022	4680	2	1	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0023	4683	2	0	1	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0024	4682	2	0	2	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0025	4680	2	0	0	2	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0026	4681	2	0	2	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0027	4676	2	2	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0028	4679	2	1	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0029	4681	2	2	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0030	4667	2	2	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0031	4664	2	2	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0032	4678	2	0	1	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0033	4681	2	2	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0034	4663	2	2	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0035	4680	2	1	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0036	4685	2	1	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0037	4684	2	1	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0038	4679	1	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0039	4687	1	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0040	4684	1	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0041	4682	1	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0042	4684	1	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0043	4676	1	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0044	4682	1	0	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0045	4681	1	0	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0046	4687	1	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0047	4684	1	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0048	4684	1	0	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0049	4683	1	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0050	4683	1	0	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0051	4683	1	0	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0052	4681	1	0	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0053	4684	1	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0054	4678	1	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0055	4684	1	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0056	4683	1	0	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0057	4679	1	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0058	4684	1	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0059	4686	1	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0060	4687	1	0	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	1/0	t0061	4683	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899