JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB7A_chr19_4038303_4071899	0/0	t0062	4683	1	0	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0063	4685	1	0	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0064	4685	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0065	4686	1	0	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0066	4694	1	0	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0067	4683	1	0	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0068	4676	1	0	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0069	4683	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0070	4682	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0071	4681	1	0	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0072	4680	1	0	0	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0073	4680	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0074	4683	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0075	4683	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0076	4678	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0077	4680	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0078	4679	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0079	4678	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0080	4681	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0081	4680	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0082	4684	1	0	0	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0083	4684	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0084	4682	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0085	4682	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0086	4683	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0087	4682	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0088	4679	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0089	4679	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0090	4680	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0091	4681	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0092	4680	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0093	4683	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0094	4683	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0095	4682	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0096	4681	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0097	4680	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0098	4683	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0099	4662	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0100	4684	1	0	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0101	4682	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0102	4682	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0103	4680	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0104	4676	1	0	0	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0105	4674	1	0	0	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0106	4678	1	0	0	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0107	4680	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0108	4681	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0109	4681	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0110	4680	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0111	4680	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899