JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB7A_chr19_4038303_4071899	0/0	t0112	4666	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0113	4665	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0114	4683	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0115	4681	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0116	4666	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0117	4663	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0118	4664	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0119	4667	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0120	4666	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0121	4665	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0122	4663	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0123	4681	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0124	4683	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0125	4676	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0126	4680	1	0	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0127	4682	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0128	4680	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0129	4681	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0130	4679	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0131	4677	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0132	4684	1	0	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0133	4687	1	0	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0134	4682	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0135	4680	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0136	4684	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0137	4682	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0138	4681	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0139	4682	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0140	4682	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0141	4680	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0142	4681	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0143	4664	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0144	4681	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0145	4678	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0146	4677	1	0	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0147	4681	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0148	4677	1	0	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0149	4680	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0150	4681	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0151	4678	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0152	4679	1	0	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0153	4678	1	0	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0154	4678	1	0	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0155	4679	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0156	4677	1	0	0	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0157	4680	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0158	4685	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0159	4683	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0160	4680	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0161	4664	1	0	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899