JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB7A_chr19_4038303_4071899	0/0	t0162	4665	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0163	4685	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0164	4682	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0165	4683	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0166	4686	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0167	4682	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0168	4697	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0169	4686	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0170	4680	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0171	4684	1	0	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0172	4682	1	0	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	t0173	4681	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7B_chr1_154997802_155023523	0/0	t0001	1987	176	24	37	92	5	18	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0002	1987	44	15	16	3	4	6	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	1/0	t0003	1987	40	19	4	5	4	7	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0004	2011	35	7	10	6	3	9	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0005	1987	11	11	0	0	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0006	2011	7	0	0	7	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0007	1984	6	6	0	0	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0008	2011	4	0	0	0	0	4	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0009	1987	3	0	0	3	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0010	1987	2	0	0	2	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0011	1987	2	2	0	0	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/1	t0012	1999	2	1	0	0	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0013	2011	2	2	0	0	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0014	2009	1	0	0	1	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0015	1987	1	0	1	0	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0016	1987	1	0	0	1	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0017	1987	1	0	0	1	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0018	1987	1	0	0	1	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0019	2011	1	0	0	1	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0020	2001	1	0	0	1	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0021	1987	1	0	0	1	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0022	1987	1	0	0	1	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0023	1987	1	1	0	0	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0024	1987	1	1	0	0	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	t0025	1987	1	1	0	0	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7C_chr18_48021672_48414383	1/1	t0001	3050	50	7	14	14	3	10	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	t0002	3053	21	13	1	5	1	1	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	t0003	3053	13	13	0	0	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	t0004	3051	9	3	3	1	0	2	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	t0005	3051	9	8	0	1	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	t0006	3055	8	0	3	4	0	1	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	t0007	3050	6	4	1	0	1	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	t0008	3050	5	3	2	0	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	t0009	3050	3	0	0	3	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	t0010	3050	3	1	1	0	1	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	t0011	3055	3	0	2	0	1	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	t0012	3051	3	3	0	0	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	t0013	3054	3	3	0	0	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383