JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1QTNF3_chr5_34012858_34048213	0/0	t0024	2814	1	0	0	0	0	1	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0025	2814	1	1	0	0	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0026	2815	1	0	0	1	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	t0027	2813	1	1	0	0	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF4_chr11_47584667_47599411	0/1	t0001	424	298	78	47	131	14	27	copy fasta	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	t0002	424	93	5	29	48	2	9	copy fasta	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	t0003	424	5	0	2	0	0	3	copy fasta	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	1/0	t0004	424	5	4	0	0	0	0	copy fasta	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	t0005	424	3	0	0	0	0	3	copy fasta	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	t0006	431	2	0	0	2	0	0	copy fasta	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	t0007	438	1	1	0	0	0	0	copy fasta	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	t0008	431	1	0	0	1	0	0	copy fasta	C1QTNF4	chr11	47584667	47599411
C1QTNF5_chr11_119333942_119345883	1/1	t0001	622	319	61	67	147	11	31	copy fasta	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	t0002	622	54	27	8	12	3	4	copy fasta	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	t0003	622	5	0	0	5	0	0	copy fasta	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	t0004	622	4	0	0	0	0	4	copy fasta	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	t0005	622	2	0	1	0	0	1	copy fasta	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	t0006	622	1	0	0	1	0	0	copy fasta	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	t0007	613	1	0	0	1	0	0	copy fasta	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	t0008	622	1	1	0	0	0	0	copy fasta	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	t0009	622	1	1	0	0	0	0	copy fasta	C1QTNF5	chr11	119333942	119345883
C1QTNF6_chr22_37175166_37193247	0/0	t0001	2058	197	33	24	113	5	22	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0002	2058	89	6	11	57	1	14	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0003	2058	47	12	22	1	3	9	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/1	t0004	2058	25	2	16	0	5	1	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0005	2058	14	13	1	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0006	2058	11	0	0	11	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0007	2058	10	10	0	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0008	2058	9	7	2	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0009	2058	5	3	1	0	1	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0010	2058	4	3	1	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0011	2058	4	4	0	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0012	2059	4	0	0	3	0	1	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0013	2058	4	0	0	0	3	1	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0014	2058	2	0	2	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0015	2058	2	0	0	2	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0016	2058	2	2	0	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0017	2058	1	1	0	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0018	2058	1	0	0	0	0	1	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0019	2058	1	0	0	1	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0020	2058	1	0	0	1	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0021	2058	1	0	0	1	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	1/0	t0022	2057	1	0	0	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0023	2058	1	0	0	1	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0024	2058	1	0	1	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0025	2058	1	0	0	1	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0026	2058	1	0	1	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0027	2058	1	1	0	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0028	2058	1	0	0	0	0	1	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0029	2058	1	0	0	1	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247