JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB8A_chr1_32534427_32610941	0/0	t0117	5756	1	1	0	0	0	0	copy fasta	ZBTB8A	chr1	32534427	32610941
ZBTB8A_chr1_32534427_32610941	0/0	t0118	5754	1	1	0	0	0	0	copy fasta	ZBTB8A	chr1	32534427	32610941
ZBTB8A_chr1_32534427_32610941	0/0	t0119	5752	1	0	1	0	0	0	copy fasta	ZBTB8A	chr1	32534427	32610941
ZBTB8B_chr1_32460072_32501686	1/1	t0001	11344	71	26	10	20	4	9	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0002	11343	11	2	4	0	2	3	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0003	11344	8	0	4	2	0	2	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0004	11339	7	0	0	7	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0005	11345	5	1	1	2	0	1	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0006	11344	4	3	1	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0007	11344	4	0	0	4	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0008	11344	4	4	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0009	11344	3	0	0	0	0	3	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0010	11342	3	3	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0011	11347	3	0	0	3	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0012	11341	2	2	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0013	11343	2	2	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0014	11342	2	2	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0015	11347	2	1	1	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0016	11344	2	0	2	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0017	11344	2	0	0	2	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0018	11343	2	1	1	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0019	11344	2	0	0	2	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0020	11344	2	0	0	0	0	2	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0021	11344	2	2	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0022	11344	2	0	0	2	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0023	11344	2	0	0	2	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0024	11343	2	2	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0025	11342	2	2	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0026	11344	2	2	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0027	11342	1	1	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0028	11342	1	1	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0029	11344	1	1	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0030	11345	1	1	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0031	11344	1	1	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0032	11344	1	1	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0033	11348	1	0	1	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0034	11345	1	0	0	1	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0035	11344	1	0	1	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0036	11344	1	0	1	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0037	11344	1	0	0	1	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0038	11344	1	0	0	1	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0039	11344	1	0	0	1	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0040	11345	1	0	0	1	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0041	11344	1	0	1	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0042	11344	1	0	0	0	0	1	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0043	11344	1	0	0	0	0	1	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0044	11345	1	0	0	1	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0045	11344	1	0	0	0	1	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0046	11344	1	1	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0047	11343	1	1	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686