JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB8B_chr1_32460072_32501686	0/0	t0048	11344	1	0	0	1	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0049	11344	1	0	0	0	0	1	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0050	11344	1	1	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0051	11344	1	1	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0052	11342	1	1	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0053	11344	1	0	0	1	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0054	11344	1	0	0	0	1	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0055	11344	1	1	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0056	11345	1	0	0	1	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0057	11344	1	1	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0058	11340	1	0	0	1	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0059	11338	1	0	0	1	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0060	11340	1	0	0	1	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0061	11340	1	0	0	1	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0062	11345	1	1	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0063	11344	1	0	0	1	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0064	11342	1	1	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0065	11344	1	1	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0066	11341	1	0	1	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0067	11342	1	0	0	0	0	1	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0068	11344	1	0	1	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	t0069	11342	1	1	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8OS_chr1_32615820_32655550	1/1	t0001	1064	152	24	35	52	16	23	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0002	1064	29	3	1	17	0	8	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0003	1064	25	0	15	9	0	1	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0004	1064	17	16	1	0	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0005	1064	14	0	0	13	0	1	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0006	1064	9	8	1	0	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0007	1063	8	1	1	5	0	1	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0008	1062	8	6	2	0	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0009	1065	5	1	0	4	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0010	1063	5	4	1	0	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0011	1064	5	5	0	0	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0012	1062	3	2	1	0	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0013	1063	3	1	2	0	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0014	1063	3	0	0	3	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0015	1064	2	0	0	1	0	1	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0016	1064	2	1	1	0	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0017	1064	2	0	0	2	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0018	1065	2	0	1	1	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0019	1065	2	0	0	2	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0020	1065	2	2	0	0	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0021	1063	1	0	1	0	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0022	1063	1	0	0	1	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0023	1064	1	1	0	0	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0024	1064	1	1	0	0	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0025	1064	1	1	0	0	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0026	1064	1	0	0	1	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0027	1062	1	1	0	0	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0028	1064	1	0	0	1	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550