JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB8OS_chr1_32615820_32655550	0/0	t0029	1064	1	0	0	0	0	1	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0030	1065	1	0	0	1	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0031	1065	1	1	0	0	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0032	1065	1	0	0	1	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0033	1064	1	0	1	0	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0034	1063	1	1	0	0	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0035	1063	1	0	0	1	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	t0036	1064	1	0	0	1	0	0	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB9_chr6_33449576_33462544	0/1	t0001	1294	250	87	46	87	7	22	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	t0002	1294	110	5	28	58	9	10	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	t0003	1294	5	3	0	2	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	t0004	1294	5	0	2	1	0	2	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	t0005	1294	2	0	2	0	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	t0006	1294	1	1	0	0	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	t0007	1294	1	1	0	0	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	t0008	1294	1	1	0	0	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZC2HC1A_chr8_78661089_78724765	0/0	t0001	2333	143	28	37	52	9	17	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	1/0	t0002	2333	75	30	8	24	6	6	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	t0003	2332	15	10	3	1	0	1	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	t0004	2333	5	4	1	0	0	0	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	t0005	2333	5	5	0	0	0	0	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	t0006	2332	5	4	1	0	0	0	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	t0007	2333	4	2	2	0	0	0	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/1	t0008	2333	3	0	1	0	1	0	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	t0009	2333	2	0	2	0	0	0	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	t0010	2333	1	0	1	0	0	0	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	t0011	2333	1	0	0	1	0	0	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	t0012	2333	1	0	0	1	0	0	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	t0013	2333	1	0	0	1	0	0	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	t0014	2334	1	1	0	0	0	0	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1B_chr6_143859474_143943343	1/1	t0001	283	330	86	54	144	6	38	copy fasta	ZC2HC1B	chr6	143859474	143943343
ZC2HC1C_chr14_75064641_75084988	0/1	t0001	2552	187	15	26	129	2	14	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0002	2552	55	30	12	0	3	10	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0003	2552	39	1	7	20	1	10	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0004	2552	25	17	6	0	0	2	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0005	2552	8	1	5	0	1	1	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0006	2552	7	0	0	7	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0007	2552	7	1	4	0	1	1	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0008	2552	7	7	0	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0009	2552	6	2	0	3	0	1	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0010	2553	5	0	2	0	3	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0011	2551	5	2	1	2	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0012	2552	4	0	1	0	0	3	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	1/0	t0013	2553	4	2	1	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0014	2553	4	3	1	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0015	2552	4	3	1	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0016	2551	3	2	0	0	0	1	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0017	2552	2	0	1	0	0	1	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0018	2552	2	0	2	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0019	2551	2	0	0	0	1	1	copy fasta	ZC2HC1C	chr14	75064641	75084988