JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZC2HC1C_chr14_75064641_75084988	0/0	t0020	2553	2	1	0	1	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0021	2552	1	1	0	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0022	2551	1	0	1	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0023	2552	1	1	0	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0024	2553	1	1	0	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0025	2552	1	0	0	0	0	1	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0026	2552	1	0	1	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0027	2551	1	0	0	1	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0028	2553	1	1	0	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0029	2552	1	0	0	0	0	1	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0030	2566	1	0	0	1	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0031	2552	1	0	0	0	0	1	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0032	2559	1	0	0	1	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0033	2552	1	0	0	1	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0034	2553	1	1	0	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0035	2552	1	0	1	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	t0036	2552	1	0	1	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC3H10_chr12_56113266_56132514	0/0	t0001	5818	66	7	24	20	8	7	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/1	t0002	5817	64	0	18	37	2	6	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0003	5817	35	1	2	21	0	11	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0004	5818	16	2	6	8	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	1/0	t0005	5817	14	12	1	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0006	5820	13	9	2	0	2	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0007	5818	12	0	0	12	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0008	5819	11	9	2	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0009	5818	7	0	0	6	1	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0010	5822	6	6	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0011	5814	6	0	0	6	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0012	5820	5	5	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0013	5819	5	2	3	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0014	5819	4	1	1	2	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0015	5817	4	0	0	4	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0016	5816	4	0	0	2	2	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0017	5820	4	4	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0018	5818	4	0	0	4	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0019	5819	3	1	2	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0020	5818	3	2	0	0	0	1	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0021	5819	3	1	1	0	0	1	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0022	5817	2	2	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0023	5819	2	0	2	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0024	5819	2	2	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0025	5819	2	2	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0026	5820	2	2	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0027	5818	2	2	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0028	5818	2	0	0	2	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0029	5816	2	2	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0030	5819	1	0	0	1	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0031	5819	1	0	0	0	0	1	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0032	5819	1	0	0	0	0	1	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0033	5820	1	0	0	0	0	1	copy fasta	ZC3H10	chr12	56113266	56132514