JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZC3H10_chr12_56113266_56132514	0/0	t0034	5820	1	1	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0035	5817	1	0	0	1	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0036	5818	1	0	0	1	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0037	5818	1	0	0	1	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0038	5818	1	0	1	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0039	5817	1	0	1	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0040	5818	1	0	0	0	0	1	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0041	5818	1	0	0	1	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0042	5817	1	0	0	1	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0043	5817	1	0	1	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0044	5817	1	0	0	1	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0045	5818	1	1	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0046	5816	1	1	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0047	5819	1	1	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0048	5820	1	0	0	0	0	1	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0049	5816	1	0	0	1	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0050	5817	1	1	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0051	5817	1	0	1	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0052	5817	1	0	0	1	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0053	5820	1	1	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0054	5821	1	1	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0055	5817	1	0	0	0	0	1	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0056	5818	1	1	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0057	5821	1	1	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0058	5821	1	1	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0059	5817	1	0	0	1	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0060	5819	1	0	0	1	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0061	5817	1	0	0	0	0	1	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0062	5817	1	0	0	1	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0063	5817	1	0	0	1	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0064	5818	1	0	0	0	1	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0065	5817	1	0	0	0	0	1	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0066	5818	1	0	1	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0067	5813	1	0	0	1	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0068	5814	1	0	0	1	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0069	5818	1	1	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0070	5818	1	0	0	1	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0071	5817	1	1	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	t0072	5820	1	0	1	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H11A_chr1_203790623_203859124	0/0	t0001	3485	83	7	23	46	1	6	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0002	3485	75	22	26	9	5	13	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0003	3483	71	10	13	39	4	5	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0004	3484	62	11	2	47	1	1	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/1	t0005	3485	15	5	4	0	2	3	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	1/0	t0006	3485	10	9	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0007	3483	8	7	1	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0008	3485	7	0	0	7	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0009	3483	6	0	0	5	0	1	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0010	3485	5	5	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0011	3486	3	0	1	2	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124