JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZC3H11A_chr1_203790623_203859124	0/0	t0012	3484	3	0	0	3	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0013	3483	2	0	0	0	0	2	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0014	3484	2	2	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0015	3486	2	2	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0016	3483	2	2	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0017	3484	1	1	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0018	3485	1	0	0	1	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0019	3483	1	0	0	0	0	1	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0020	3486	1	0	0	1	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0021	3485	1	0	0	1	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0022	3483	1	0	0	1	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0023	3483	1	0	0	1	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0024	3483	1	0	0	1	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0025	3483	1	0	0	1	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0026	3484	1	1	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0027	3483	1	0	0	1	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0028	3485	1	0	0	0	1	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0029	3484	1	1	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0030	3486	1	1	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0031	3485	1	1	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0032	3485	1	0	1	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0033	3485	1	1	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0034	3485	1	1	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0035	3485	1	0	0	0	0	1	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0036	3485	1	0	0	0	0	1	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0037	3483	1	1	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0038	3485	1	1	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0039	3485	1	0	0	1	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0040	3486	1	1	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0041	3486	1	1	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0042	3486	1	0	0	1	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0043	3485	1	1	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	t0044	3485	1	0	1	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11B_chr1_219603012_219618105	0/1	t0001	2311	171	25	13	111	4	17	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	t0002	2310	118	6	36	58	7	11	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	1/0	t0003	2310	74	12	16	35	2	8	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	t0004	2311	33	25	5	0	2	1	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	t0005	2309	12	11	1	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	t0006	2310	7	0	0	7	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	t0007	2310	7	7	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	t0008	2311	6	6	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	t0009	2310	6	0	1	0	3	2	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	t0010	2309	2	2	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	t0011	2309	2	1	1	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	t0012	2310	1	0	0	1	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	t0013	2311	1	0	0	1	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	t0014	2310	1	0	1	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	t0015	2311	1	0	0	0	0	1	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	t0016	2311	1	1	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	t0017	2311	1	0	0	0	0	1	copy fasta	ZC3H11B	chr1	219603012	219618105