JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZC3H11B_chr1_219603012_219618105	0/0	t0018	2310	1	1	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	t0019	2311	1	0	0	0	0	1	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	t0020	2311	1	1	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	t0021	2311	1	0	0	1	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11C_chr6_65296476_65311574	0/1	t0001	2312	267	19	51	153	12	31	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0002	2311	50	6	9	28	4	3	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	1/0	t0003	2312	37	30	4	0	0	2	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0004	2312	27	17	3	0	0	7	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0005	2312	12	0	3	4	1	4	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0006	2312	8	8	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0007	2312	7	6	1	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0008	2311	4	0	0	4	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0009	2312	4	0	0	4	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0010	2312	3	0	0	3	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0011	2312	3	0	0	3	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0012	2312	3	0	0	3	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0013	2312	3	3	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0014	2312	2	0	0	2	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0015	2312	2	2	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0016	2312	2	2	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0017	2312	2	0	1	0	0	1	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0018	2312	1	0	0	1	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0019	2312	1	0	0	1	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0020	2312	1	1	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0021	2312	1	1	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0022	2312	1	1	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	t0023	2312	1	0	0	0	1	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H12A_chr1_37469580_37489377	1/1	t0001	855	420	85	79	188	18	48	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	t0002	855	5	4	1	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	t0003	857	3	3	0	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	t0004	855	3	0	0	3	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	t0005	855	1	0	0	1	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	t0006	855	1	1	0	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	t0007	855	1	1	0	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12B_chrX_65029826_65512887	0/0	t0001	5759	101	3	19	61	5	13	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12B_chrX_65029826_65512887	0/0	t0002	5759	22	19	2	0	0	1	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12B_chrX_65029826_65512887	0/0	t0003	5760	19	17	2	0	0	0	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12B_chrX_65029826_65512887	0/0	t0004	5759	4	3	1	0	0	0	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12B_chrX_65029826_65512887	0/0	t0005	5760	3	2	1	0	0	0	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12B_chrX_65029826_65512887	0/0	t0006	5759	2	0	0	2	0	0	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12B_chrX_65029826_65512887	0/0	t0007	5760	2	2	0	0	0	0	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12B_chrX_65029826_65512887	0/0	t0008	5760	1	0	1	0	0	0	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12B_chrX_65029826_65512887	0/0	t0009	5759	1	0	0	0	0	1	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12B_chrX_65029826_65512887	0/0	t0010	5759	1	1	0	0	0	0	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12B_chrX_65029826_65512887	0/0	t0011	5759	1	1	0	0	0	0	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12B_chrX_65029826_65512887	0/0	t0012	5756	1	1	0	0	0	0	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12B_chrX_65029826_65512887	0/0	t0013	5755	1	1	0	0	0	0	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12B_chrX_65029826_65512887	0/0	t0014	5759	1	1	0	0	0	0	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12B_chrX_65029826_65512887	0/0	t0015	5759	1	1	0	0	0	0	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12B_chrX_65029826_65512887	0/0	t0016	5759	1	1	0	0	0	0	copy fasta	ZC3H12B	chrX	65029826	65512887