JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZC3H12B_chrX_65029826_65512887	0/0	t0017	5758	1	1	0	0	0	0	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12B_chrX_65029826_65512887	0/0	t0018	5759	1	0	1	0	0	0	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12B_chrX_65029826_65512887	0/0	t0019	5759	1	0	0	0	0	1	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12C_chr11_110088392_110176841	0/0	t0001	6121	59	2	9	38	2	8	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0002	6114	49	16	6	17	6	4	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0003	6123	36	2	5	28	0	1	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0004	6114	24	0	5	19	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	1/0	t0005	6125	24	12	0	11	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/1	t0006	6125	21	5	5	8	1	1	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0007	6127	20	1	5	1	0	13	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0008	6116	13	4	1	4	1	3	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0009	6118	10	8	2	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0010	6129	8	6	2	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0011	6127	8	3	2	1	2	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0012	6123	7	0	5	1	0	1	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0013	6115	7	0	3	3	1	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0014	6116	6	2	0	3	0	1	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0015	6118	5	4	1	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0016	6117	5	1	1	3	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0017	6115	5	0	0	5	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0018	6118	4	1	3	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0019	6131	4	4	0	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0020	6120	3	3	0	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0021	6129	3	1	1	0	1	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0022	6126	2	0	0	2	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0023	6114	2	2	0	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0024	6119	2	2	0	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0025	6129	2	2	0	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0026	6121	2	2	0	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0027	6113	2	0	2	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0028	6125	2	0	0	2	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0029	6121	2	0	0	2	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0030	6118	1	1	0	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0031	6120	1	1	0	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0032	6118	1	0	1	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0033	6124	1	0	0	1	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0034	6124	1	0	0	1	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0035	6122	1	0	0	1	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0036	6120	1	0	1	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0037	6116	1	1	0	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0038	6114	1	0	0	0	0	1	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0039	6110	1	0	0	1	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0040	6114	1	0	0	1	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0041	6129	1	1	0	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0042	6121	1	1	0	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0043	6123	1	0	0	1	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0044	6125	1	0	0	0	0	1	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0045	6123	1	1	0	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0046	6121	1	1	0	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	t0047	6121	1	0	0	1	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841