JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1QTNF6_chr22_37175166_37193247	0/0	t0030	2058	1	0	0	1	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0031	2058	1	0	0	1	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0032	2058	1	0	0	1	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	t0033	2058	1	1	0	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF7_chr4_15423033_15451167	0/1	t0001	3451	125	8	22	80	4	10	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	1/0	t0002	3451	120	23	19	61	5	11	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0003	3449	66	4	14	43	2	3	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0004	3451	59	7	16	17	6	13	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0005	3451	23	20	2	0	0	1	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0006	3449	12	11	1	0	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0007	3449	8	8	0	0	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0008	3452	5	5	0	0	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0009	3449	3	3	0	0	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0010	3451	3	0	0	3	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0011	3451	3	3	0	0	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0012	3451	2	1	0	1	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0013	3451	2	2	0	0	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0014	3451	2	0	0	2	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0015	3451	1	0	0	0	1	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0016	3451	1	1	0	0	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0017	3451	1	0	0	1	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0018	3449	1	0	0	1	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0019	3451	1	0	0	1	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0020	3451	1	0	0	0	0	1	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0021	3451	1	0	0	0	0	1	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0022	3451	1	1	0	0	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0023	3451	1	0	0	1	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0024	3451	1	0	0	1	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	t0025	3451	1	1	0	0	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF8_chr16_1083226_1101244	0/1	t0001	2648	140	7	17	98	3	14	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0002	2680	41	3	20	6	5	7	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0003	2648	29	0	7	16	5	1	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0004	2680	25	5	5	4	2	9	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0005	2680	25	23	0	0	0	2	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0006	2648	22	0	0	12	1	9	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0007	2680	16	12	4	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0008	2648	13	0	0	10	0	3	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0009	2680	9	7	2	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0010	2680	7	7	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0011	2680	6	4	0	2	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0012	2680	4	0	0	3	0	1	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0013	2680	4	4	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0014	2648	3	0	3	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0015	2648	3	0	2	0	1	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0016	2648	3	0	3	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0017	2680	3	0	2	0	0	1	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0018	2680	2	2	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0019	2649	2	0	2	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0020	2648	2	2	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0021	2649	2	0	1	0	0	1	copy fasta	C1QTNF8	chr16	1083226	1101244