JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZC3H12D_chr6_149441795_149490014	0/0	t0042	4182	2	2	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0043	4177	2	2	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0044	4177	2	2	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0045	4173	2	2	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0046	4176	2	0	0	0	0	2	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0047	4167	2	0	0	1	1	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0048	4165	2	0	0	0	0	2	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0049	4183	2	0	0	2	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0050	4178	2	0	0	2	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0051	4175	2	0	0	0	0	2	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0052	4173	2	0	0	1	0	1	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0053	4170	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0054	4167	1	0	1	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0055	4178	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0056	4174	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0057	4161	1	0	0	0	0	1	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0058	4160	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0059	4160	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0060	4183	1	0	0	0	0	1	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0061	4186	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0062	4181	1	0	0	0	0	1	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0063	4181	1	0	0	0	0	1	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0064	4179	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0065	4179	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0066	4182	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0067	4182	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0068	4181	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0069	4181	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0070	4157	1	0	0	0	0	1	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0071	4180	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0072	4180	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0073	4174	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0074	4177	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0075	4175	1	0	1	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0076	4171	1	0	1	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0077	4169	1	0	1	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0078	4169	1	0	1	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0079	4168	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0080	4172	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0081	4165	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0082	4161	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0083	4160	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0084	4161	1	0	1	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0085	4182	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0086	4185	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0087	4184	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0088	4161	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0089	4161	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0090	4185	1	0	1	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0091	4183	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014