JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZC3H12D_chr6_149441795_149490014	0/0	t0092	4183	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0093	4181	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0094	4181	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0095	4179	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0096	4179	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0097	4177	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0098	4177	1	0	0	0	0	1	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0099	4176	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0100	4177	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0101	4173	1	0	1	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0102	4169	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0103	4182	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0104	4180	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0105	4178	1	0	0	0	0	1	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0106	4176	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0107	4176	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	t0108	4176	1	0	1	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H13_chr13_45949465_46057746	1/0	t0001	3015	192	45	34	93	3	16	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	t0002	3011	78	4	18	44	3	9	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	t0003	3015	16	0	4	9	1	2	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	t0004	3011	13	12	1	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	t0005	3013	6	0	4	0	0	2	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/1	t0006	3015	3	0	1	0	0	1	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	t0007	3015	2	2	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	t0008	3015	2	2	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	t0009	3015	2	2	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	t0010	3011	1	0	0	1	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	t0011	3015	1	0	0	1	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	t0012	3015	1	0	0	1	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	t0013	3011	1	1	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	t0014	3015	1	1	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	t0015	3015	1	0	0	0	1	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	t0016	3015	1	1	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	t0017	3015	1	0	0	1	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	t0018	3015	1	0	0	1	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	t0019	3015	1	0	0	1	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H14_chr14_88558037_88632596	0/0	t0001	15946	42	1	8	26	3	4	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0002	15950	41	5	14	18	1	3	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0003	15944	21	10	0	7	0	4	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0004	15946	18	7	4	2	0	5	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0005	15950	13	0	1	12	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0006	15950	8	7	1	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0007	15946	7	0	0	3	1	3	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0008	15946	7	0	0	7	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0009	15946	7	0	4	0	2	1	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/1	t0010	15947	6	0	2	0	3	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0011	15952	3	3	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0012	15950	3	3	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0013	15947	3	0	2	0	0	1	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0014	15946	3	0	0	3	0	0	copy fasta	ZC3H14	chr14	88558037	88632596