JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZC3H14_chr14_88558037_88632596	0/0	t0015	15945	3	0	2	0	0	1	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0016	15946	3	3	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0017	15946	3	0	3	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0018	15945	3	3	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0019	15952	2	2	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0020	15954	2	2	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0021	15946	2	0	1	0	1	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0022	15945	2	0	0	2	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0023	15945	2	2	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0024	15946	2	0	0	0	0	2	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0025	15945	2	0	1	0	0	1	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0026	15944	2	0	0	2	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0027	15947	2	2	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0028	15947	2	1	1	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0029	15949	2	0	0	2	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0030	15951	2	1	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0031	15949	2	0	0	1	0	1	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0032	15944	2	2	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0033	15945	2	0	0	2	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0034	15951	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0035	15950	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0036	15948	1	0	1	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0037	15947	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0038	15948	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0039	15948	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0040	15947	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0041	15946	1	0	1	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0042	15946	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0043	15946	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0044	15944	1	0	0	0	0	1	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0045	15944	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0046	15944	1	0	0	0	0	1	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0047	15944	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0048	15944	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	1/0	t0049	15943	1	0	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0050	15945	1	0	1	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0051	15948	1	0	1	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0052	15948	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0053	15946	1	0	1	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0054	15946	1	0	1	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0055	15947	1	0	0	0	0	1	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0056	15946	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0057	15946	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0058	15946	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0059	15982	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0060	15946	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0061	15946	1	0	0	0	0	1	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0062	15946	1	0	1	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0063	15947	1	0	1	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0064	15946	1	0	0	0	0	1	copy fasta	ZC3H14	chr14	88558037	88632596