JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZC3H14_chr14_88558037_88632596	0/0	t0065	15946	1	0	0	0	0	1	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0066	15946	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0067	15948	1	0	0	0	0	1	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0068	15946	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0069	15933	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0070	15946	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0071	15947	1	0	0	0	0	1	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0072	15945	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0073	15947	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0074	15946	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0075	15946	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0076	15946	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0077	15947	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0078	15946	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0079	15946	1	0	0	0	1	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0080	15947	1	0	1	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0081	15946	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0082	15947	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0083	15945	1	0	1	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0084	15947	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0085	15950	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0086	15950	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0087	15946	1	0	1	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0088	15946	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0089	15948	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0090	15944	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0091	15945	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0092	15945	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0093	15947	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0094	15949	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0095	15948	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0096	15948	1	0	1	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0097	15950	1	0	1	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0098	15949	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0099	15950	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0100	15950	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0101	15951	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0102	15948	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0103	15950	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0104	15948	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0105	15949	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0106	15950	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0107	15949	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0108	15950	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0109	15951	1	0	0	0	1	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0110	15945	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0111	15945	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0112	15950	1	0	1	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0113	15945	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0114	15946	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596