JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZC3H14_chr14_88558037_88632596	0/0	t0115	15945	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0116	15947	1	0	0	0	1	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0117	15946	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0118	15952	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0119	15945	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0120	15944	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0121	15944	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0122	15945	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	t0123	15946	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H15_chr2_186481260_186514361	1/0	t0001	752	320	75	67	141	9	27	copy fasta	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/1	t0002	751	48	21	8	8	2	8	copy fasta	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	t0003	752	4	0	0	0	2	2	copy fasta	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	t0004	751	2	0	1	0	1	0	copy fasta	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	t0005	752	1	0	0	1	0	0	copy fasta	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	t0006	751	1	0	0	0	0	1	copy fasta	ZC3H15	chr2	186481260	186514361
ZC3H18_chr16_88565403_88636964	1/1	t0001	844	358	81	66	157	10	42	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	t0002	844	4	3	0	0	0	1	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	t0003	844	3	0	2	0	1	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	t0004	844	3	1	1	0	0	1	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	t0005	844	1	1	0	0	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	t0006	844	1	1	0	0	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	t0007	844	1	1	0	0	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	t0008	844	1	1	0	0	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	t0009	844	1	0	0	1	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	t0010	844	1	1	0	0	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	t0011	844	1	0	1	0	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	t0012	844	1	0	0	1	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	t0013	844	1	0	0	0	1	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	t0014	844	1	0	0	1	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H3_chr8_143432659_143546447	1/1	t0001	424	258	88	54	76	9	29	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	t0002	424	85	2	9	65	7	2	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	t0003	424	4	4	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	t0004	424	2	0	0	0	0	2	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	t0005	424	1	0	0	0	0	1	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	t0006	424	1	0	0	1	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	t0007	424	1	0	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H4_chr19_47059187_47118776	1/0	t0001	2232	184	49	25	83	5	21	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/1	t0002	2233	103	6	33	36	8	19	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0003	2233	29	11	6	12	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0004	2231	6	1	0	4	0	1	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0005	2232	6	1	4	0	1	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0006	2234	6	4	0	2	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0007	2234	4	0	0	4	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0008	2233	2	2	0	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0009	2234	2	2	0	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0010	2229	2	1	0	1	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0011	2234	2	2	0	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0012	2233	1	0	1	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0013	2232	1	1	0	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0014	2233	1	0	0	0	0	1	copy fasta	ZC3H4	chr19	47059187	47118776