JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZC3H4_chr19_47059187_47118776	0/0	t0015	2232	1	0	0	1	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0016	2234	1	1	0	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0017	2232	1	0	0	0	0	1	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0018	2232	1	0	0	0	0	1	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0019	2232	1	0	0	0	0	1	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0020	2233	1	0	1	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0021	2230	1	0	0	1	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0022	2234	1	0	0	0	0	1	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0023	2232	1	0	0	1	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0024	2233	1	0	0	1	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	t0025	2232	1	1	0	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H6_chr2_112270597_112345059	0/0	t0001	7930	145	39	29	69	0	8	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0002	7966	13	1	2	9	0	1	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	1/0	t0003	7970	10	1	4	3	0	1	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0004	7946	9	9	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0005	7960	9	0	1	8	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0006	7964	8	0	2	5	0	1	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0007	7968	8	0	0	5	2	1	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0008	7962	7	1	1	5	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0009	7931	7	0	5	0	1	1	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0010	7946	4	0	0	0	2	2	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0011	7930	3	0	3	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0012	7930	3	2	1	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0013	7930	2	1	1	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0014	7948	2	0	1	0	0	1	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0015	7956	2	0	2	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0016	7968	2	0	0	0	0	2	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0017	7970	2	0	1	1	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0018	7952	2	2	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0019	7935	2	0	0	0	0	2	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0020	7930	2	2	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0021	7930	2	1	1	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0022	7966	1	0	0	0	0	1	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/1	t0023	7958	1	0	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0024	7968	1	0	1	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0025	7948	1	1	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0026	7952	1	1	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0027	7960	1	1	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0028	7966	1	1	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0029	7946	1	0	0	0	1	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0030	7928	1	0	0	0	0	1	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0031	7930	1	0	0	1	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0032	7932	1	0	0	1	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0033	7957	1	0	0	1	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0034	7942	1	0	0	1	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0035	7946	1	0	0	1	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0036	7948	1	0	0	0	0	1	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0037	7952	1	0	0	1	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0038	7954	1	0	0	1	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0039	7964	1	0	1	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059