JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZC3H6_chr2_112270597_112345059	0/0	t0040	7970	1	0	1	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0041	7950	1	0	0	0	0	1	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0042	7942	1	0	0	1	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0043	7952	1	1	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0044	7954	1	1	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0045	7964	1	1	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0046	7930	1	0	0	1	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0047	7930	1	0	0	1	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0048	7930	1	0	1	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0049	7931	1	0	0	1	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0050	7932	1	1	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0051	7930	1	0	0	1	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0052	7930	1	1	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0053	7932	1	0	0	0	1	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0054	7930	1	0	0	0	0	1	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0055	7930	1	0	0	1	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0056	7930	1	0	0	1	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0057	7930	1	0	0	1	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0058	7960	1	1	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0059	7930	1	1	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0060	7930	1	1	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0061	7930	1	0	0	0	0	1	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0062	7964	1	0	0	0	1	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0063	7930	1	1	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0064	7962	1	0	0	1	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	t0065	7930	1	0	0	1	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H7A_chr16_11745597_11802258	1/1	t0001	890	315	64	74	133	16	26	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	t0002	890	74	4	2	50	2	16	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	t0003	890	1	0	0	1	0	0	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7B_chr22_41296525_41365147	0/0	t0001	2973	119	15	20	62	8	14	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0002	2973	46	1	0	45	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0003	2973	31	0	18	1	2	10	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0004	2973	29	3	8	18	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0005	2973	14	11	3	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0006	2971	14	13	1	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0007	2973	9	8	1	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0008	2973	8	7	1	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0009	2973	7	6	1	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0010	2972	6	0	0	6	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0011	2973	4	2	1	0	1	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0012	2973	4	3	1	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0013	2973	3	0	2	0	1	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0014	2973	3	0	0	2	0	1	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0015	2973	3	3	0	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0016	2973	3	2	0	1	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0017	2973	3	0	0	3	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0018	2973	1	0	0	1	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0019	2973	1	0	1	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0020	2973	1	0	0	0	0	1	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0021	2971	1	1	0	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147