JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZC3H7B_chr22_41296525_41365147	0/0	t0022	2973	1	0	0	1	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0023	2973	1	0	0	0	0	1	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0024	2973	1	0	0	0	0	1	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0025	2973	1	1	0	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0026	2973	1	1	0	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0027	2973	1	1	0	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0028	2973	1	1	0	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0029	2973	1	1	0	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0030	2973	1	0	0	1	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0031	2971	1	1	0	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0032	2973	1	1	0	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0033	2973	1	1	0	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0034	2973	1	0	0	1	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	t0035	2973	1	1	0	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	1/0	t0036	2973	1	0	0	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H8_chr2_112206529_112260042	0/0	t0001	5016	33	15	6	10	0	2	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0002	5015	29	15	5	8	0	1	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	1/0	t0003	5017	25	1	12	9	0	2	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0004	5010	23	0	6	12	1	4	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0005	5018	21	1	8	11	0	1	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0006	5016	11	0	4	5	1	1	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0007	5014	10	7	2	0	0	1	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0008	5017	10	3	0	7	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0009	5009	9	0	0	4	3	2	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0010	5018	9	0	0	9	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0011	5019	8	0	0	7	0	1	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0012	5011	6	1	3	1	0	1	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0013	5013	5	3	2	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0014	5011	4	0	0	3	0	1	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/1	t0015	5011	4	0	1	2	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0016	5017	4	0	0	4	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0017	5010	3	0	0	3	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0018	5018	3	0	1	2	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0019	5008	3	0	0	2	1	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0020	5021	3	3	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0021	5014	3	2	1	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0022	5018	3	1	0	0	1	1	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0023	5018	2	1	0	0	0	1	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0024	5017	2	0	0	0	0	2	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0025	5009	2	0	2	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0026	5012	2	0	0	1	0	1	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0027	5015	2	2	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0028	5018	2	1	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0029	5015	2	1	1	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0030	5019	2	0	0	1	0	1	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0031	5020	2	0	0	0	0	2	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0032	5010	2	0	0	2	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0033	5018	2	0	0	2	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0034	5017	2	0	0	2	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0035	5019	2	0	0	2	0	0	copy fasta	ZC3H8	chr2	112206529	112260042