JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZC3H8_chr2_112206529_112260042	0/0	t0036	5039	1	0	0	0	1	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0037	5034	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0038	5036	1	0	0	0	1	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0039	5035	1	0	0	0	1	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0040	5034	1	0	1	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0041	5014	1	0	0	0	1	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0042	5039	1	0	0	0	0	1	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0043	5018	1	0	0	0	0	1	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0044	5017	1	0	0	0	1	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0045	5036	1	0	0	0	0	1	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0046	5011	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0047	5019	1	0	1	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0048	5018	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0049	5017	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0050	5017	1	0	1	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0051	5014	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0052	5016	1	0	1	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0053	5017	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0054	5015	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0055	5017	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0056	5016	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0057	5012	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0058	5014	1	0	0	0	0	1	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0059	5017	1	0	1	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0060	5017	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0061	5019	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0062	5018	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0063	5021	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0064	5020	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0065	5000	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0066	5006	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0067	5010	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0068	5013	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0069	5013	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0070	5010	1	0	0	0	0	1	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0071	5016	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0072	5010	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0073	5015	1	0	1	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0074	5022	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0075	5017	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0076	5014	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0077	5016	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0078	5016	1	0	1	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0079	5023	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0080	5016	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0081	5012	1	0	1	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0082	5017	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0083	5018	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0084	5024	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0085	5014	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042