JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZC3H8_chr2_112206529_112260042	0/0	t0086	5028	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0087	5014	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0088	5017	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0089	5016	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0090	5015	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0091	5015	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0092	5019	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0093	5017	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0094	5019	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0095	5015	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0096	5009	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0097	5018	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	t0098	5013	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3HAV1L_chr7_139020706_139041042	1/1	t0001	864	330	59	63	162	14	30	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	t0002	866	28	9	0	13	0	6	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	t0003	866	9	0	0	9	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	t0004	864	8	8	0	0	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	t0005	864	7	0	0	7	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	t0006	865	6	1	0	5	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	t0007	866	5	5	0	0	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	t0008	864	4	4	0	0	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	t0009	864	3	3	0	0	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	t0010	864	3	3	0	0	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	t0011	864	2	2	0	0	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	t0012	864	1	0	0	1	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	t0013	864	1	1	0	0	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	t0014	865	1	0	0	1	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	t0015	864	1	0	1	0	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	t0016	866	1	1	0	0	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1_chr7_139038515_139114720	1/1	t0001	4469	65	3	18	35	4	3	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0002	4454	59	17	9	19	4	10	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0003	4469	23	0	2	21	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0004	4454	21	6	1	13	0	1	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0005	4470	18	3	11	3	1	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0006	4468	12	0	0	11	0	1	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0007	4470	8	2	0	6	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0008	4459	7	3	0	0	0	4	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0009	4461	6	6	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0010	4468	6	0	0	6	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0011	4455	5	1	0	3	1	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0012	4459	4	3	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0013	4454	4	4	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0014	4460	3	3	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0015	4468	3	3	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0016	4472	3	2	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0017	4469	3	0	0	3	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0018	4454	2	0	0	0	0	2	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0019	4455	2	0	0	2	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0020	4454	2	0	0	2	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0021	4472	2	2	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720