JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1QTNF8_chr16_1083226_1101244	0/0	t0022	2648	2	0	0	1	0	1	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0023	2680	2	2	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0024	2680	1	1	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0025	2648	1	0	0	1	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0026	2680	1	0	1	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0027	2680	1	1	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0028	2680	1	1	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0029	2680	1	1	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0030	2680	1	1	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0031	2680	1	0	0	0	1	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0032	2648	1	0	1	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0033	2648	1	0	0	1	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0034	2680	1	1	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0035	2680	1	1	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0036	2648	1	0	0	1	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0037	2649	1	0	1	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0038	2680	1	1	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0039	2648	1	0	0	1	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0040	2681	1	0	0	1	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0041	2648	1	0	0	1	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0042	2680	1	1	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0043	2648	1	0	0	0	0	1	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0044	2648	1	0	0	1	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0045	2648	1	0	0	1	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0046	2680	1	0	0	1	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0047	2680	1	0	1	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0048	2680	1	1	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0049	2648	1	0	0	1	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	1/0	t0050	2648	1	0	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0051	2680	1	1	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0052	2680	1	1	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0053	2680	1	1	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	t0054	2680	1	1	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF9B_chr13_23886099_23902502	1/0	t0001	401	264	76	44	101	10	32	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	t0002	401	121	3	25	82	3	8	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/1	t0003	401	29	14	8	0	2	4	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	t0004	401	4	0	3	0	1	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	t0005	401	2	0	2	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	t0006	401	2	0	0	0	0	2	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	t0007	401	1	0	0	1	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	t0008	401	1	1	0	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9_chr13_24304580_24327531	1/1	t0001	823	427	79	69	217	15	45	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	t0002	823	19	8	3	0	3	5	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	t0003	823	8	6	2	0	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	t0004	823	3	3	0	0	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	t0005	823	3	0	0	3	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	t0006	823	3	3	0	0	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	t0007	823	1	0	0	1	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	t0008	823	1	0	0	1	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	t0009	823	1	1	0	0	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531