JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
ZC3HAV1_chr7_139038515_139114720	0/0	t0022	4469	2	0	0	2	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0023	4460	2	0	0	1	1	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0024	4459	2	0	0	2	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0025	4457	2	2	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0026	4471	2	1	1	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0027	4470	2	1	0	0	1	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0028	4457	1	0	0	1	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0029	4453	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0030	4461	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0031	4459	1	0	0	1	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0032	4465	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0033	4455	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0034	4454	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0035	4469	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0036	4463	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0037	4464	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0038	4466	1	0	0	1	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0039	4460	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0040	4468	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0041	4468	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0042	4468	1	0	0	1	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0043	4468	1	0	0	1	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0044	4469	1	0	0	1	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0045	4459	1	0	1	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0046	4453	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0047	4460	1	0	0	0	1	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0048	4454	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0049	4454	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0050	4454	1	0	0	0	1	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0051	4457	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0052	4462	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0053	4461	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0054	4461	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0055	4460	1	0	0	1	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0056	4460	1	0	0	0	1	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0057	4469	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0058	4460	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0059	4468	1	0	0	0	1	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0060	4469	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0061	4468	1	0	0	1	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0062	4471	1	0	1	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0063	4470	1	0	1	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0064	4470	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0065	4470	1	0	0	0	1	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0066	4469	1	0	1	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0067	4469	1	0	1	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0068	4471	1	0	0	1	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0069	4470	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0070	4472	1	0	1	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	t0071	4454	1	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720