JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZC3HC1_chr7_130013292_130056374	0/1	t0001	381	296	70	70	112	11	32	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	1/0	t0002	381	10	9	0	0	0	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	t0003	381	3	3	0	0	0	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	t0004	381	3	3	0	0	0	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	t0005	381	2	2	0	0	0	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	t0006	381	1	0	0	0	1	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	t0007	381	1	1	0	0	0	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC4H2_chrX_64910807_64981450	1/1	t0001	2050	135	6	31	76	7	13	copy fasta	ZC4H2	chrX	64910807	64981450
ZC4H2_chrX_64910807_64981450	0/0	t0002	2050	37	34	2	0	0	1	copy fasta	ZC4H2	chrX	64910807	64981450
ZC4H2_chrX_64910807_64981450	0/0	t0003	2050	19	17	2	0	0	0	copy fasta	ZC4H2	chrX	64910807	64981450
ZC4H2_chrX_64910807_64981450	0/0	t0004	2050	3	0	2	0	0	1	copy fasta	ZC4H2	chrX	64910807	64981450
ZC4H2_chrX_64910807_64981450	0/0	t0005	2050	3	1	0	2	0	0	copy fasta	ZC4H2	chrX	64910807	64981450
ZC4H2_chrX_64910807_64981450	0/0	t0006	2050	2	1	1	0	0	0	copy fasta	ZC4H2	chrX	64910807	64981450
ZC4H2_chrX_64910807_64981450	0/0	t0007	2050	1	0	0	0	0	1	copy fasta	ZC4H2	chrX	64910807	64981450
ZC4H2_chrX_64910807_64981450	0/0	t0008	2050	1	0	0	1	0	0	copy fasta	ZC4H2	chrX	64910807	64981450
ZC4H2_chrX_64910807_64981450	0/0	t0009	2050	1	0	1	0	0	0	copy fasta	ZC4H2	chrX	64910807	64981450
ZC4H2_chrX_64910807_64981450	0/0	t0010	2049	1	0	0	1	0	0	copy fasta	ZC4H2	chrX	64910807	64981450
ZC4H2_chrX_64910807_64981450	0/0	t0011	2050	1	1	0	0	0	0	copy fasta	ZC4H2	chrX	64910807	64981450
ZC4H2_chrX_64910807_64981450	0/0	t0012	2050	1	0	0	1	0	0	copy fasta	ZC4H2	chrX	64910807	64981450
ZC4H2_chrX_64910807_64981450	0/0	t0013	2050	1	1	0	0	0	0	copy fasta	ZC4H2	chrX	64910807	64981450
ZC4H2_chrX_64910807_64981450	0/0	t0014	2049	1	1	0	0	0	0	copy fasta	ZC4H2	chrX	64910807	64981450
ZC4H2_chrX_64910807_64981450	0/0	t0015	2050	1	0	0	1	0	0	copy fasta	ZC4H2	chrX	64910807	64981450
ZCCHC10_chr5_132991985_133031549	1/1	t0001	1611	157	30	28	69	5	23	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC10_chr5_132991985_133031549	0/0	t0002	1611	121	41	19	52	1	8	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC10_chr5_132991985_133031549	0/0	t0003	1611	12	11	1	0	0	0	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC10_chr5_132991985_133031549	0/0	t0004	1612	5	5	0	0	0	0	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC10_chr5_132991985_133031549	0/0	t0005	1611	4	3	1	0	0	0	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC10_chr5_132991985_133031549	0/0	t0006	1612	3	3	0	0	0	0	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC10_chr5_132991985_133031549	0/0	t0007	1611	2	0	0	2	0	0	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC10_chr5_132991985_133031549	0/0	t0008	1611	2	0	1	0	0	1	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC10_chr5_132991985_133031549	0/0	t0009	1611	1	0	0	0	0	1	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC10_chr5_132991985_133031549	0/0	t0010	1611	1	1	0	0	0	0	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC10_chr5_132991985_133031549	0/0	t0011	1611	1	1	0	0	0	0	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC10_chr5_132991985_133031549	0/0	t0012	1611	1	1	0	0	0	0	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC10_chr5_132991985_133031549	0/0	t0013	1611	1	0	0	0	0	1	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC10_chr5_132991985_133031549	0/0	t0014	1611	1	0	0	1	0	0	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC12_chrX_118818824_118831968	1/1	t0001	989	277	51	54	134	10	26	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC12_chrX_118818824_118831968	0/0	t0002	989	19	17	2	0	0	0	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC12_chrX_118818824_118831968	0/0	t0003	990	5	0	1	4	0	0	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC12_chrX_118818824_118831968	0/0	t0004	989	4	4	0	0	0	0	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC12_chrX_118818824_118831968	0/0	t0005	989	3	0	0	2	0	1	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC12_chrX_118818824_118831968	0/0	t0006	989	1	0	0	1	0	0	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC12_chrX_118818824_118831968	0/0	t0007	983	1	0	0	0	1	0	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC12_chrX_118818824_118831968	0/0	t0008	990	1	0	0	1	0	0	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC12_chrX_118818824_118831968	0/0	t0009	989	1	0	0	0	0	1	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC12_chrX_118818824_118831968	0/0	t0010	989	1	1	0	0	0	0	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC12_chrX_118818824_118831968	0/0	t0011	989	1	0	0	1	0	0	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC12_chrX_118818824_118831968	0/0	t0012	989	1	1	0	0	0	0	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC12_chrX_118818824_118831968	0/0	t0013	989	1	0	0	1	0	0	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC12_chrX_118818824_118831968	0/0	t0014	989	1	0	0	1	0	0	copy fasta	ZCCHC12	chrX	118818824	118831968