JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZCCHC12_chrX_118818824_118831968	0/0	t0015	989	1	0	0	1	0	0	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC13_chrX_74299180_74310034	1/1	t0001	355	249	72	49	91	5	30	copy fasta	ZCCHC13	chrX	74299180	74310034
ZCCHC13_chrX_74299180_74310034	0/0	t0002	356	2	0	1	1	0	0	copy fasta	ZCCHC13	chrX	74299180	74310034
ZCCHC13_chrX_74299180_74310034	0/0	t0003	355	1	0	1	0	0	0	copy fasta	ZCCHC13	chrX	74299180	74310034
ZCCHC13_chrX_74299180_74310034	0/0	t0004	356	1	0	0	1	0	0	copy fasta	ZCCHC13	chrX	74299180	74310034
ZCCHC13_chrX_74299180_74310034	0/0	t0005	354	1	0	0	1	0	0	copy fasta	ZCCHC13	chrX	74299180	74310034
ZCCHC14_chr16_87401248_87498024	1/0	t0001	4819	126	51	12	35	1	26	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0002	4819	47	2	7	36	1	1	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0003	4819	21	3	11	0	2	5	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0004	4825	15	5	0	9	0	1	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0005	4819	14	0	4	10	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0006	4813	10	0	4	6	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/1	t0007	4819	6	3	1	0	1	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0008	4819	5	0	5	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0009	4819	4	0	0	4	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0010	4825	4	0	0	4	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0011	4807	3	3	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0012	4819	3	3	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0013	4819	3	3	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0014	4801	2	0	2	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0015	4819	2	0	0	2	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0016	4819	2	0	0	2	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0017	4819	2	0	0	2	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0018	4786	2	0	0	2	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0019	4801	2	2	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0020	4813	2	2	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0021	4831	2	0	2	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0022	4819	2	0	1	1	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0023	4819	2	0	0	0	2	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0024	4819	2	2	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0025	4819	2	0	0	2	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0026	4819	2	0	0	2	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0027	4819	2	0	0	1	0	1	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0028	4819	2	2	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0029	4819	2	0	0	0	0	2	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0030	4813	2	0	0	2	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0031	4813	2	2	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0032	4825	2	0	0	2	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0033	4831	2	1	0	1	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0034	4813	2	0	0	2	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0035	4819	2	0	2	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0036	4807	1	1	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0037	4813	1	0	0	1	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0038	4819	1	0	1	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0039	4819	1	0	1	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0040	4807	1	0	0	1	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0041	4807	1	1	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0042	4819	1	0	1	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0043	4819	1	0	1	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0044	4813	1	0	0	1	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024