JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZCCHC14_chr16_87401248_87498024	0/0	t0045	4813	1	1	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0046	4819	1	0	0	1	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0047	4819	1	0	0	0	0	1	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0048	4819	1	0	0	0	0	1	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0049	4819	1	0	1	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0050	4819	1	0	0	0	0	1	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0051	4819	1	1	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0052	4819	1	0	0	0	1	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0053	4819	1	0	1	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0054	4819	1	0	1	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0055	4819	1	1	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0056	4819	1	1	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0057	4819	1	1	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0058	4819	1	0	0	0	0	1	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0059	4819	1	0	0	1	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0060	4819	1	0	0	1	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0061	4819	1	1	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0062	4813	1	0	1	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0063	4813	1	1	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0064	4813	1	1	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0065	4825	1	0	1	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0066	4819	1	1	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0067	4831	1	0	0	1	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	t0068	4819	1	1	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC17_chr1_31292032_31369936	1/0	t0001	843	122	21	22	61	4	13	copy fasta	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	t0002	843	102	33	23	35	3	8	copy fasta	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	t0003	843	58	9	5	31	1	12	copy fasta	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	t0004	843	33	0	0	33	0	0	copy fasta	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/1	t0005	843	18	9	5	0	2	1	copy fasta	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	t0006	843	7	4	3	0	0	0	copy fasta	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	t0007	843	3	1	2	0	0	0	copy fasta	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	t0008	843	2	2	0	0	0	0	copy fasta	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	t0009	843	1	1	0	0	0	0	copy fasta	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	t0010	843	1	1	0	0	0	0	copy fasta	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	t0011	843	1	1	0	0	0	0	copy fasta	ZCCHC17	chr1	31292032	31369936
ZCCHC18_chrX_104107523_104120842	1/1	t0001	1729	289	50	48	145	13	31	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	t0002	1729	12	11	1	0	0	0	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	t0003	1729	9	9	0	0	0	0	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	t0004	1729	3	0	3	0	0	0	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	t0005	1729	1	0	0	1	0	0	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	t0006	1729	1	0	0	0	0	1	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	t0007	1729	1	0	0	0	0	1	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	t0008	1727	1	1	0	0	0	0	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	t0009	1762	1	0	0	1	0	0	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	t0010	1729	1	1	0	0	0	0	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	t0011	1729	1	1	0	0	0	0	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	t0012	1729	1	1	0	0	0	0	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC24_chr10_79377325_79450624	0/0	t0001	4205	28	6	8	4	1	9	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0002	4207	27	0	1	26	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0003	4207	18	1	2	10	1	4	copy fasta	ZCCHC24	chr10	79377325	79450624