JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZCCHC24_chr10_79377325_79450624	0/0	t0004	4207	16	0	0	13	0	3	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/1	t0005	4205	16	0	2	7	0	6	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0006	4205	11	4	5	0	2	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0007	4207	11	0	0	11	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0008	4207	9	1	0	6	0	2	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0009	4205	9	0	2	7	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0010	4205	9	1	2	6	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0011	4205	8	0	0	6	0	2	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0012	4207	7	4	1	2	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0013	4207	6	0	0	6	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0014	4207	6	0	0	3	1	2	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0015	4207	5	0	5	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0016	4206	5	5	0	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0017	4207	5	3	2	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0018	4207	5	0	2	3	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0019	4205	4	0	0	4	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0020	4207	4	4	0	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0021	4207	4	1	1	1	0	1	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0022	4205	4	4	0	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0023	4206	4	0	4	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0024	4207	3	0	3	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0025	4207	3	0	2	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0026	4206	3	0	2	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0027	4205	3	3	0	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0028	4204	3	1	0	2	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0029	4205	3	0	1	0	2	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0030	4205	3	1	2	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0031	4205	3	0	0	0	0	3	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0032	4206	3	0	0	3	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0033	4204	3	0	0	2	0	1	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0034	4205	3	0	0	3	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0035	4206	3	0	0	3	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0036	4207	3	0	1	1	0	1	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0037	4205	3	0	0	2	0	1	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	1/0	t0038	4205	2	0	1	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0039	4207	2	0	0	2	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0040	4207	2	2	0	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0041	4206	2	2	0	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0042	4205	2	0	2	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0043	4207	2	0	0	2	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0044	4206	2	0	1	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0045	4207	2	2	0	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0046	4205	2	2	0	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0047	4207	2	0	2	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0048	4206	2	0	1	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0049	4207	2	0	0	2	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0050	4207	2	0	0	2	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0051	4206	2	0	1	0	1	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0052	4207	2	0	1	0	1	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0053	4205	2	0	1	0	1	0	copy fasta	ZCCHC24	chr10	79377325	79450624