JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZCCHC24_chr10_79377325_79450624	0/0	t0104	4205	1	1	0	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0105	4205	1	1	0	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0106	4205	1	0	1	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0107	4204	1	1	0	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0108	4206	1	0	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0109	4205	1	0	0	0	0	1	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0110	4206	1	0	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0111	4204	1	0	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0112	4205	1	0	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0113	4205	1	0	0	0	0	1	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0114	4207	1	1	0	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0115	4207	1	0	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0116	4206	1	0	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0117	4207	1	1	0	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0118	4207	1	0	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0119	4207	1	0	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0120	4207	1	0	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0121	4207	1	0	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0122	4206	1	0	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0123	4206	1	0	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0124	4205	1	0	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0125	4206	1	0	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0126	4206	1	0	0	0	0	1	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0127	4206	1	1	0	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0128	4204	1	0	0	0	0	1	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0129	4205	1	0	1	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0130	4207	1	0	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0131	4205	1	1	0	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0132	4207	1	1	0	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0133	4205	1	0	0	0	1	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0134	4207	1	0	0	0	0	1	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0135	4204	1	0	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0136	4207	1	0	1	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0137	4205	1	0	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0138	4207	1	0	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0139	4205	1	0	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	t0140	4206	1	0	1	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC2_chr18_62518025_62583579	0/0	t0001	2398	91	9	14	54	4	10	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0002	2399	84	12	15	41	6	10	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0003	2400	22	3	13	0	0	6	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0004	2404	16	14	0	0	0	2	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0005	2399	15	0	5	6	0	4	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0006	2403	14	9	1	0	4	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0007	2398	10	8	1	1	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0008	2399	9	8	1	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0009	2402	8	7	1	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	1/1	t0010	2401	7	0	2	1	1	1	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0011	2399	5	0	0	4	0	1	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0012	2400	4	0	2	2	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0013	2399	3	0	0	3	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579