JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZCCHC2_chr18_62518025_62583579	0/0	t0014	2401	3	3	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0015	2400	2	0	2	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0016	2400	2	2	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0017	2400	2	2	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0018	2403	2	2	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0019	2401	2	1	1	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0020	2399	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0021	2399	1	0	0	0	0	1	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0022	2400	1	0	0	1	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0023	2398	1	0	0	1	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0024	2399	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0025	2398	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0026	2399	1	0	0	1	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0027	2400	1	0	0	0	1	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0028	2400	1	0	0	1	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0029	2401	1	0	0	0	0	1	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	t0030	2400	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC3_chr20_292570_305321	1/1	t0001	1541	200	46	53	67	3	29	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0002	1541	121	11	13	81	7	9	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0003	1541	67	17	11	32	0	7	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0004	1546	12	0	0	11	0	1	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0005	1544	5	5	0	0	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0006	1541	4	0	3	1	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0007	1542	3	3	0	0	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0008	1542	2	1	1	0	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0009	1541	1	1	0	0	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0010	1544	1	1	0	0	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0011	1542	1	0	0	1	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0012	1541	1	0	0	1	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0013	1541	1	1	0	0	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0014	1543	1	1	0	0	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0015	1541	1	1	0	0	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0016	1541	1	1	0	0	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0017	1541	1	1	0	0	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0018	1541	1	1	0	0	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0019	1541	1	0	0	1	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0020	1541	1	0	0	1	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0021	1541	1	0	1	0	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	t0022	1541	1	1	0	0	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC4_chr4_25307774_25375383	0/1	t0001	1256	239	49	45	111	8	25	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	t0002	1256	90	23	19	42	0	6	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	1/0	t0003	1256	37	2	8	20	1	5	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	t0004	1256	37	0	3	34	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	t0005	1256	31	8	5	10	2	6	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	t0006	1256	10	9	1	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	t0007	1255	6	0	2	0	1	3	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	t0008	1256	3	0	0	3	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	t0009	1256	2	2	0	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	t0010	1256	2	2	0	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	t0011	1256	1	1	0	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383