JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZCCHC4_chr4_25307774_25375383	0/0	t0012	1256	1	0	1	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	t0013	1256	1	1	0	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	t0014	1256	1	0	0	0	0	1	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	t0015	1256	1	1	0	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC7_chr9_37115574_37363149	1/1	t0001	953	165	38	31	65	8	21	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	t0002	952	39	7	7	16	1	8	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	t0003	953	29	0	5	19	1	4	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	t0004	950	19	17	1	0	0	1	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	t0005	954	11	8	1	1	0	1	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	t0006	951	6	0	6	0	0	0	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	t0007	951	5	0	1	4	0	0	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	t0008	954	3	3	0	0	0	0	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	t0009	953	2	2	0	0	0	0	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	t0010	952	1	1	0	0	0	0	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	t0011	953	1	0	0	0	0	1	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	t0012	952	1	0	0	1	0	0	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC8_chr12_122466600_122505932	1/1	t0001	1990	163	8	33	91	12	17	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	t0002	1990	144	23	38	60	4	19	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	t0003	1989	19	19	0	0	0	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	t0004	1989	10	9	0	0	1	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	t0005	1990	9	6	1	0	0	2	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	t0006	1989	6	6	0	0	0	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	t0007	1989	4	2	0	1	1	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	t0008	1989	3	1	0	0	0	2	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	t0009	1990	2	2	0	0	0	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	t0010	1990	2	2	0	0	0	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	t0011	1990	1	0	0	1	0	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	t0012	1990	1	0	0	1	0	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	t0013	1990	1	0	1	0	0	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	t0014	1990	1	1	0	0	0	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	t0015	1990	1	0	1	0	0	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	t0016	1990	1	1	0	0	0	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC9_chr5_81296587_81318297	1/1	t0001	765	307	60	54	137	16	38	copy fasta	ZCCHC9	chr5	81296587	81318297
ZCCHC9_chr5_81296587_81318297	0/0	t0002	765	34	13	7	7	2	5	copy fasta	ZCCHC9	chr5	81296587	81318297
ZCCHC9_chr5_81296587_81318297	0/0	t0003	765	12	12	0	0	0	0	copy fasta	ZCCHC9	chr5	81296587	81318297
ZCCHC9_chr5_81296587_81318297	0/0	t0004	765	2	2	0	0	0	0	copy fasta	ZCCHC9	chr5	81296587	81318297
ZCCHC9_chr5_81296587_81318297	0/0	t0005	765	2	1	1	0	0	0	copy fasta	ZCCHC9	chr5	81296587	81318297
ZCCHC9_chr5_81296587_81318297	0/0	t0006	765	1	0	0	1	0	0	copy fasta	ZCCHC9	chr5	81296587	81318297
ZCCHC9_chr5_81296587_81318297	0/0	t0007	765	1	0	0	1	0	0	copy fasta	ZCCHC9	chr5	81296587	81318297
ZCCHC9_chr5_81296587_81318297	0/0	t0008	765	1	1	0	0	0	0	copy fasta	ZCCHC9	chr5	81296587	81318297
ZCCHC9_chr5_81296587_81318297	0/0	t0009	765	1	1	0	0	0	0	copy fasta	ZCCHC9	chr5	81296587	81318297
ZCCHC9_chr5_81296587_81318297	0/0	t0010	765	1	0	0	0	0	1	copy fasta	ZCCHC9	chr5	81296587	81318297
ZCRB1_chr12_42307086_42331094	0/1	t0001	1155	185	35	43	83	5	18	copy fasta	ZCRB1	chr12	42307086	42331094
ZCRB1_chr12_42307086_42331094	1/0	t0002	1155	147	30	23	69	4	20	copy fasta	ZCRB1	chr12	42307086	42331094
ZCRB1_chr12_42307086_42331094	0/0	t0003	1155	45	10	7	22	2	4	copy fasta	ZCRB1	chr12	42307086	42331094
ZCRB1_chr12_42307086_42331094	0/0	t0004	1155	7	7	0	0	0	0	copy fasta	ZCRB1	chr12	42307086	42331094
ZCRB1_chr12_42307086_42331094	0/0	t0005	1155	5	5	0	0	0	0	copy fasta	ZCRB1	chr12	42307086	42331094
ZCRB1_chr12_42307086_42331094	0/0	t0006	1159	3	0	0	3	0	0	copy fasta	ZCRB1	chr12	42307086	42331094
ZCRB1_chr12_42307086_42331094	0/0	t0007	1155	2	2	0	0	0	0	copy fasta	ZCRB1	chr12	42307086	42331094
ZCRB1_chr12_42307086_42331094	0/0	t0008	1155	1	0	0	0	1	0	copy fasta	ZCRB1	chr12	42307086	42331094