JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1RL_chr12_7089554_7114214	0/0	t0001	1873	77	16	9	38	2	12	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	1/0	t0002	1872	71	23	20	9	8	10	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0003	1872	61	2	6	46	1	6	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0004	1873	57	5	6	42	1	3	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0005	1873	48	11	1	34	1	1	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0006	1873	36	0	4	24	1	7	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0007	1873	22	21	1	0	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0008	1873	11	1	10	0	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0009	1873	8	1	6	0	0	1	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0010	1873	7	1	0	6	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0011	1873	6	0	5	0	1	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0012	1873	5	0	4	0	0	1	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0013	1873	4	4	0	0	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0014	1873	4	4	0	0	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0015	1872	2	0	0	2	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0016	1873	2	2	0	0	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0017	1873	2	0	1	0	1	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0018	1873	2	2	0	0	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0019	1873	1	0	0	0	0	1	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0020	1873	1	0	1	0	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0021	1873	1	0	0	0	0	1	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0022	1873	1	0	0	1	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0023	1873	1	1	0	0	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0024	1872	1	0	0	0	0	1	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0025	1873	1	0	0	1	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/1	t0026	1872	1	0	0	0	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0027	1872	1	1	0	0	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0028	1872	1	0	0	1	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0029	1873	1	0	0	0	0	1	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0030	1873	1	1	0	0	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	t0031	1873	1	0	0	0	0	1	copy fasta	C1RL	chr12	7089554	7114214
C1R_chr12_7075219_7097445	0/0	t0001	371	307	63	65	141	10	28	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	t0002	370	12	2	1	5	0	4	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	t0003	371	1	1	0	0	0	0	copy fasta	C1R	chr12	7075219	7097445
C1S_chr12_7055718_7076032	1/1	t0001	616	316	77	62	128	11	36	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	t0002	616	50	14	6	23	3	4	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	t0003	616	2	0	0	2	0	0	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	t0004	616	1	1	0	0	0	0	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	t0005	616	1	0	0	1	0	0	copy fasta	C1S	chr12	7055718	7076032
C1orf100_chr1_244347635_244394663	1/0	t0001	708	245	46	40	140	6	12	copy fasta	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/1	t0002	708	128	46	30	16	10	25	copy fasta	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	t0003	708	72	3	12	45	2	10	copy fasta	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	t0004	708	5	5	0	0	0	0	copy fasta	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	t0005	708	1	0	0	0	0	1	copy fasta	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	t0006	708	1	0	0	1	0	0	copy fasta	C1orf100	chr1	244347635	244394663
C1orf105_chr1_172415685_172473829	1/1	t0001	437	293	74	67	104	13	33	copy fasta	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	t0002	437	18	6	5	4	1	2	copy fasta	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	t0003	437	4	0	0	4	0	0	copy fasta	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	t0004	437	2	2	0	0	0	0	copy fasta	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	t0005	437	1	0	0	1	0	0	copy fasta	C1orf105	chr1	172415685	172473829