JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZDHHC11B_chr5_705355_789729	0/0	t0038	2357	2	0	0	2	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0039	2357	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0040	2357	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0041	2357	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0042	2357	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0043	2227	1	0	0	0	1	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0044	2336	1	0	1	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0045	2357	1	0	0	0	0	1	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0046	2227	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0047	2227	1	0	0	0	1	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0048	2357	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0049	2227	1	0	1	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0050	2357	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0051	1296	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0052	2611	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0053	3539	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0054	2357	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0055	2357	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0056	3562	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0057	2227	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0058	2227	1	0	0	0	0	1	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0059	2227	1	0	0	0	1	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0060	2206	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0061	2227	1	0	0	0	0	1	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0062	2227	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0063	2227	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0064	2357	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0065	1297	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0066	2357	1	0	1	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0067	2227	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0068	2227	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0069	2357	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0070	1514	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0071	2357	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0072	2334	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0073	2357	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0074	2227	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0075	2227	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0076	2248	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11_chr5_790605_855986	0/1	t0001	1387	139	11	30	72	10	15	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0002	1326	45	1	17	22	1	4	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0003	1351	45	15	1	29	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0004	1389	7	6	1	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0005	1414	7	7	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0006	1414	7	7	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0007	1326	6	5	0	0	0	1	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0008	1351	5	4	1	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0009	1326	5	5	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0010	1387	5	0	0	5	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0011	1414	5	4	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986