JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZDHHC11_chr5_790605_855986	0/0	t0012	1389	4	4	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0013	1351	4	1	0	2	0	1	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0014	1414	3	3	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0015	1387	3	2	1	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0016	1387	3	0	0	0	3	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0017	1387	3	0	3	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0018	1387	3	3	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0019	1387	2	0	1	0	0	1	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	1/0	t0020	1368	2	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0021	1414	1	0	1	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0022	1326	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0023	1326	1	1	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0024	1366	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0025	1389	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0026	1326	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0027	1326	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0028	1351	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	t0029	1351	1	1	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC12_chr9_128715873_128729127	1/1	t0001	343	353	87	74	134	12	44	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	t0002	343	6	0	0	6	0	0	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	t0003	343	2	2	0	0	0	0	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	t0004	343	1	1	0	0	0	0	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC13_chr11_19112168_19181415	1/1	t0001	538	327	77	49	158	12	29	copy fasta	ZDHHC13	chr11	19112168	19181415
ZDHHC13_chr11_19112168_19181415	0/0	t0002	537	20	2	7	8	0	3	copy fasta	ZDHHC13	chr11	19112168	19181415
ZDHHC13_chr11_19112168_19181415	0/0	t0003	538	3	3	0	0	0	0	copy fasta	ZDHHC13	chr11	19112168	19181415
ZDHHC14_chr6_157376190_157683157	0/0	t0001	5870	49	13	7	17	2	10	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	1/1	t0002	5868	34	1	9	12	1	9	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0003	5871	6	4	0	0	1	1	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0004	5866	6	6	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0005	5871	6	0	6	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0006	5870	5	0	1	2	0	2	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0007	5869	4	0	0	3	0	1	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0008	5869	3	0	0	1	1	1	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0009	5870	3	3	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0010	5871	3	3	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0011	5871	3	2	1	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0012	5869	3	1	0	2	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0013	5869	3	0	0	2	1	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0014	5871	2	1	1	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0015	5868	2	2	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0016	5872	2	2	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0017	5870	2	0	1	0	0	1	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0018	5870	2	0	0	1	0	1	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0019	5869	2	0	0	2	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0020	5871	2	0	0	1	0	1	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0021	5869	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0022	5866	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0023	5866	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0024	5927	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0025	5872	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157