JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZDHHC14_chr6_157376190_157683157	0/0	t0026	5870	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0027	5867	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0028	5866	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0029	5870	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0030	5870	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0031	5867	1	0	0	1	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0032	5869	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0033	5868	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0034	5866	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0035	5870	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0036	5870	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0037	5867	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0038	5870	1	0	1	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0039	5867	1	0	1	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0040	5868	1	0	0	1	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0041	6181	1	0	0	1	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0042	5870	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0043	5870	1	0	0	1	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0044	5867	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0045	5869	1	0	0	0	1	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0046	5867	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0047	5870	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0048	5872	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0049	5870	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0050	5870	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0051	5867	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0052	5869	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0053	5870	1	0	1	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0054	5868	1	0	0	0	0	1	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0055	5870	1	0	0	0	0	1	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0056	5982	1	0	1	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0057	5868	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0058	5869	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0059	5869	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0060	5871	1	0	0	0	1	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0061	5870	1	0	0	1	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0062	5872	1	0	1	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0063	5870	1	0	1	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0064	5870	1	0	0	0	0	1	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0065	5870	1	0	0	0	0	1	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	t0066	5868	1	0	0	0	0	1	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC15_chrX_75363427_75528037	0/0	t0001	4550	117	23	13	68	0	13	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0002	4551	38	3	16	6	2	11	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	1/0	t0003	4565	12	9	2	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0004	4549	8	6	2	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0005	4553	6	2	1	0	2	1	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0006	4549	6	3	3	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0007	4569	5	1	0	0	0	4	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0008	4570	4	3	1	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0009	4546	4	4	0	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037