JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZDHHC15_chrX_75363427_75528037	0/0	t0010	4550	4	0	2	0	1	1	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0011	4566	3	3	0	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0012	4551	3	1	0	1	0	1	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0013	4566	2	2	0	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0014	4549	2	1	0	1	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/1	t0015	4551	2	0	1	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0016	4571	2	2	0	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0017	4568	1	1	0	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0018	4551	1	1	0	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0019	4564	1	1	0	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0020	4573	1	1	0	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0021	4572	1	1	0	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0022	4570	1	1	0	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0023	4547	1	1	0	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0024	4552	1	0	1	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0025	4552	1	0	0	1	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0026	4550	1	0	0	1	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0027	4551	1	0	0	1	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0028	4569	1	0	0	1	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0029	4550	1	0	0	1	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0030	4550	1	0	0	1	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0031	4568	1	1	0	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0032	4572	1	1	0	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0033	4569	1	1	0	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0034	4573	1	1	0	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	t0035	4566	1	0	0	0	0	1	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC16_chr10_97441175_97462370	1/1	t0001	844	411	88	74	189	12	46	copy fasta	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	t0002	844	3	0	3	0	0	0	copy fasta	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	t0003	844	3	3	0	0	0	0	copy fasta	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	t0004	844	1	0	0	1	0	0	copy fasta	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	t0005	844	1	0	0	1	0	0	copy fasta	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	t0006	844	1	0	1	0	0	0	copy fasta	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	t0007	844	1	1	0	0	0	0	copy fasta	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	t0008	844	1	0	0	1	0	0	copy fasta	ZDHHC16	chr10	97441175	97462370
ZDHHC17_chr12_76759115_76858696	0/1	t0001	2833	126	28	23	52	8	14	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	1/0	t0002	2834	110	25	27	39	4	14	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0003	2834	26	5	5	14	0	2	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0004	2829	21	5	6	7	2	1	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0005	2833	8	8	0	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0006	2833	3	3	0	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0007	2834	3	3	0	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0008	2830	3	0	3	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0009	2833	2	2	0	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0010	2833	2	2	0	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0011	2834	1	0	1	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0012	2834	1	1	0	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0013	2834	1	1	0	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0014	2834	1	0	0	0	0	1	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0015	2833	1	0	0	1	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0016	2833	1	0	0	1	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696