JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZDHHC17_chr12_76759115_76858696	0/0	t0017	2833	1	1	0	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0018	2833	1	0	0	1	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0019	2833	1	1	0	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0020	2833	1	0	1	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0021	2833	1	0	0	1	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0022	2834	1	1	0	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0023	2833	1	1	0	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	t0024	2833	1	1	0	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC18_chr1_26821688_26862604	0/0	t0001	3879	124	37	29	40	1	17	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	1/0	t0002	3879	30	11	12	0	2	4	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/1	t0003	3879	23	0	5	4	2	11	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0004	3879	18	14	4	0	0	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0005	3879	12	2	4	3	3	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0006	3879	11	4	5	0	1	1	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0007	3879	7	0	4	0	1	2	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0008	3879	7	7	0	0	0	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0009	3879	5	0	1	0	3	1	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0010	3879	3	0	3	0	0	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0011	3879	3	3	0	0	0	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0012	3879	2	0	0	0	0	2	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0013	3879	2	0	0	2	0	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0014	3879	2	2	0	0	0	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0015	3879	2	2	0	0	0	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0016	3879	1	0	1	0	0	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0017	3879	1	0	0	0	1	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0018	3879	1	0	0	0	0	1	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0019	3879	1	1	0	0	0	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0020	3879	1	0	0	0	1	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0021	3879	1	1	0	0	0	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0022	3879	1	1	0	0	0	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0023	3879	1	0	0	0	0	1	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0024	3879	1	0	0	0	1	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0025	3879	1	1	0	0	0	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	t0026	3879	1	0	0	1	0	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC19_chr3_196192452_196216400	1/1	t0001	379	301	28	71	146	14	40	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	t0002	379	71	50	8	12	0	1	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	t0003	379	25	0	0	25	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	t0004	379	17	11	4	0	2	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	t0005	379	10	7	0	0	0	3	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	t0006	379	5	0	0	3	0	2	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	t0007	379	3	0	0	3	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	t0008	379	2	0	0	2	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	t0009	379	2	1	1	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	t0010	379	2	2	0	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	t0011	379	1	0	0	0	0	1	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	t0012	392	1	0	0	1	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	t0013	379	1	0	0	0	0	1	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	t0014	379	1	1	0	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC1_chr16_67389152_67421477	1/0	t0001	804	109	22	29	30	6	21	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC1_chr16_67389152_67421477	0/0	t0002	792	53	47	2	1	0	3	copy fasta	ZDHHC1	chr16	67389152	67421477