JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZDHHC1_chr16_67389152_67421477	0/0	t0003	798	12	7	2	3	0	0	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC1_chr16_67389152_67421477	0/1	t0004	810	11	1	5	0	1	3	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC1_chr16_67389152_67421477	0/0	t0005	816	5	0	0	0	0	5	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC1_chr16_67389152_67421477	0/0	t0006	792	3	0	2	0	1	0	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC1_chr16_67389152_67421477	0/0	t0007	810	2	2	0	0	0	0	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC1_chr16_67389152_67421477	0/0	t0008	816	2	2	0	0	0	0	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC1_chr16_67389152_67421477	0/0	t0009	798	1	1	0	0	0	0	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC1_chr16_67389152_67421477	0/0	t0010	798	1	1	0	0	0	0	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC1_chr16_67389152_67421477	0/0	t0011	804	1	1	0	0	0	0	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC20_chr13_21367571_21464303	1/1	t0001	4258	145	36	34	43	8	22	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0002	4258	65	1	14	40	0	10	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0003	4258	21	12	5	0	1	3	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0004	4258	8	6	2	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0005	4258	8	8	0	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0006	4258	7	7	0	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0007	4258	7	2	3	0	2	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0008	4260	3	3	0	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0009	4258	3	3	0	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0010	4258	3	2	1	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0011	4258	2	2	0	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0012	4258	2	1	1	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0013	4258	2	2	0	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0014	4258	2	0	2	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0015	4256	2	0	0	0	2	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0016	4258	2	2	0	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0017	4258	2	2	0	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0018	4258	1	0	1	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0019	4258	1	1	0	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0020	4258	1	0	1	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0021	4258	1	0	0	0	0	1	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0022	4258	1	1	0	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0023	4258	1	1	0	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0024	4258	1	1	0	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0025	4258	1	0	1	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0026	4258	1	0	1	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0027	4258	1	0	0	1	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0028	4258	1	0	0	1	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0029	4258	1	0	0	1	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0030	4258	1	0	0	1	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0031	4258	1	0	0	1	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0032	4258	1	0	0	0	1	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0033	4258	1	0	1	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0034	4258	1	1	0	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	t0035	4258	1	0	1	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC21_chr9_14606071_14698432	0/0	t0001	8323	46	1	11	26	1	7	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0002	8327	35	3	10	14	3	5	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0003	8319	20	1	3	14	1	1	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0004	8321	18	5	4	9	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0005	8321	18	2	7	4	3	2	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0006	8329	14	2	0	11	0	1	copy fasta	ZDHHC21	chr9	14606071	14698432