JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZDHHC21_chr9_14606071_14698432	0/0	t0057	8331	1	0	0	0	0	1	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0058	8325	1	0	1	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/1	t0059	8327	1	0	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0060	8321	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0061	8323	1	0	1	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0062	8331	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0063	8333	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0064	8331	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0065	8329	1	0	0	0	1	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0066	8321	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0067	8332	1	0	1	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0068	8319	1	0	1	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0069	8327	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0070	8331	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0071	8334	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0072	8323	1	0	0	0	0	1	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0073	8325	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0074	8325	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0075	8325	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0076	8321	1	0	0	0	0	1	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0077	8323	1	0	0	0	0	1	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0078	8325	1	0	1	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0079	8323	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0080	8323	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0081	8323	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0082	8248	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0083	8321	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0084	8321	1	0	1	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0085	8321	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0086	8323	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0087	8325	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0088	8317	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0089	8323	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0090	8321	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0091	8319	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0092	8323	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0093	8319	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0094	8321	1	0	1	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0095	8327	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0096	8323	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0097	8327	1	0	1	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0098	8321	1	0	0	0	0	1	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0099	8325	1	0	1	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0100	8327	1	0	1	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0101	8327	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0102	8329	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0103	8329	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0104	8337	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0105	8329	1	0	1	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0106	8327	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432