JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZDHHC21_chr9_14606071_14698432	0/0	t0107	8332	1	0	0	0	1	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0108	8334	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0109	8323	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0110	8327	1	0	1	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0111	8323	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0112	8325	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0113	8319	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0114	8319	1	1	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0115	8319	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0116	8319	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0117	8323	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0118	8317	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0119	8317	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0120	8323	1	0	0	0	0	1	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0121	8321	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0122	8321	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	t0123	8329	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC22_chr14_77126270_77146791	0/1	t0001	2639	45	0	4	36	0	4	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0002	2619	25	12	0	9	0	4	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0003	2641	20	7	0	12	0	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0004	2641	19	3	6	8	1	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0005	2617	16	7	0	9	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0006	2641	14	0	9	3	1	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0007	2639	12	0	6	3	0	3	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0008	2641	12	0	0	12	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0009	2637	11	0	1	7	0	3	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0010	2637	10	1	6	2	1	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0011	2641	10	1	1	8	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0012	2639	10	0	2	8	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0013	2637	9	0	2	7	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0014	2643	7	0	2	2	2	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0015	2639	7	0	0	4	0	3	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0016	2627	7	2	2	0	1	2	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0017	2641	7	0	5	0	1	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0018	2641	7	0	0	3	0	4	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0019	2647	5	2	1	0	0	2	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0020	2637	5	0	0	3	1	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0021	2635	5	0	1	2	2	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0022	2637	5	0	0	5	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0023	2649	5	5	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0024	2639	5	0	0	5	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0025	2643	5	0	5	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0026	2637	5	5	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0027	2633	5	0	0	5	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0028	2633	4	0	0	4	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0029	2627	4	0	1	0	1	2	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0030	2637	4	0	0	4	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0031	2645	4	1	2	0	0	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0032	2641	4	0	4	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0033	2643	4	0	0	4	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791